Strain Fitness in Sinorhizobium meliloti 1021 around SMc00800

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00798 and SMc00799 are separated by 24 nucleotidesSMc00799 and SMc00800 are separated by 110 nucleotidesSMc00800 and SMc00801 are separated by 315 nucleotides SMc00798: SMc00798 - hypothetical protein, at 818,874 to 819,122 SMc00798 SMc00799: SMc00799 - hypothetical protein, at 819,147 to 819,719 SMc00799 SMc00800: SMc00800 - hypothetical protein, at 819,830 to 820,273 SMc00800 SMc00801: SMc00801 - hypothetical protein, at 820,589 to 821,245 SMc00801 Position (kb) 819 820 821Strain fitness (log2 ratio) -1 0 1 2at 819.159 kb on + strandat 819.160 kb on - strandat 819.162 kb on - strandat 819.216 kb on - strand, within SMc00799at 819.216 kb on - strand, within SMc00799at 819.572 kb on + strand, within SMc00799at 819.573 kb on - strand, within SMc00799at 819.573 kb on - strand, within SMc00799at 819.674 kb on - strandat 819.763 kb on + strandat 819.763 kb on + strandat 819.764 kb on - strandat 819.764 kb on - strandat 819.764 kb on - strandat 819.831 kb on + strandat 819.971 kb on - strand, within SMc00800at 820.007 kb on - strand, within SMc00800at 820.278 kb on + strandat 820.278 kb on + strandat 820.278 kb on + strandat 820.278 kb on + strandat 820.279 kb on - strandat 820.279 kb on - strandat 820.279 kb on - strandat 820.279 kb on - strandat 820.279 kb on - strandat 820.279 kb on - strandat 820.279 kb on - strandat 820.323 kb on + strandat 820.323 kb on + strandat 820.323 kb on + strandat 820.323 kb on + strandat 820.323 kb on + strandat 820.323 kb on + strandat 820.324 kb on - strandat 820.324 kb on - strandat 820.363 kb on - strandat 820.375 kb on - strandat 820.375 kb on - strandat 820.375 kb on - strandat 820.641 kb on + strandat 820.641 kb on + strandat 820.642 kb on - strandat 820.642 kb on - strandat 820.658 kb on + strand, within SMc00801at 820.737 kb on - strand, within SMc00801at 820.737 kb on - strand, within SMc00801at 820.739 kb on + strand, within SMc00801at 820.750 kb on - strand, within SMc00801at 820.785 kb on - strand, within SMc00801at 820.854 kb on - strand, within SMc00801at 820.872 kb on - strand, within SMc00801

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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819,159 + +0.6
819,160 - +0.1
819,162 - -0.2
819,216 - SMc00799 0.12 -0.5
819,216 - SMc00799 0.12 -0.2
819,572 + SMc00799 0.74 -0.0
819,573 - SMc00799 0.74 +0.1
819,573 - SMc00799 0.74 -0.6
819,674 - +0.9
819,763 + -0.6
819,763 + -0.2
819,764 - +1.0
819,764 - -0.1
819,764 - -1.6
819,831 + -0.4
819,971 - SMc00800 0.32 +0.9
820,007 - SMc00800 0.40 -0.0
820,278 + +0.0
820,278 + -0.3
820,278 + -0.3
820,278 + -0.3
820,279 - +0.4
820,279 - +0.1
820,279 - -0.1
820,279 - +0.2
820,279 - -1.0
820,279 - -0.2
820,279 - -0.0
820,323 + -0.2
820,323 + -0.4
820,323 + +0.2
820,323 + -0.2
820,323 + +2.4
820,323 + -0.7
820,324 - -0.1
820,324 - -0.8
820,363 - -0.6
820,375 - +0.5
820,375 - -0.8
820,375 - -0.8
820,641 + -0.2
820,641 + -0.1
820,642 - +0.3
820,642 - -0.2
820,658 + SMc00801 0.11 -0.4
820,737 - SMc00801 0.23 -1.7
820,737 - SMc00801 0.23 -0.6
820,739 + SMc00801 0.23 +0.5
820,750 - SMc00801 0.25 -0.7
820,785 - SMc00801 0.30 +1.6
820,854 - SMc00801 0.40 +0.3
820,872 - SMc00801 0.43 +0.4

Or see this region's nucleotide sequence