Strain Fitness in Sinorhizobium meliloti 1021 around SMc00593

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00592 and SMc00593 overlap by 60 nucleotidesSMc00593 and SMc00594 are separated by 135 nucleotidesSMc00594 and SMc00595 are separated by 102 nucleotides SMc00592: SMc00592 - hypothetical protein, at 1,264,088 to 1,266,745 SMc00592 SMc00593: SMc00593 - hypothetical protein, at 1,266,686 to 1,267,198 SMc00593 SMc00594: SMc00594 - beta-etherase (BETA-aryl ether cleaving enzyme) protein, at 1,267,334 to 1,268,023 SMc00594 SMc00595: SMc00595 - nucleoside diphosphate kinase, at 1,268,126 to 1,268,548 SMc00595 Position (kb) 1266 1267 1268Strain fitness (log2 ratio) -1 0 1at 1265.865 kb on + strand, within SMc00592at 1265.896 kb on - strand, within SMc00592at 1265.907 kb on - strand, within SMc00592at 1265.909 kb on + strand, within SMc00592at 1265.909 kb on + strand, within SMc00592at 1265.910 kb on - strand, within SMc00592at 1265.910 kb on - strand, within SMc00592at 1265.910 kb on - strand, within SMc00592at 1265.910 kb on - strand, within SMc00592at 1266.026 kb on + strand, within SMc00592at 1266.027 kb on - strand, within SMc00592at 1266.044 kb on + strand, within SMc00592at 1266.044 kb on + strand, within SMc00592at 1266.044 kb on + strand, within SMc00592at 1266.045 kb on - strand, within SMc00592at 1266.045 kb on - strand, within SMc00592at 1266.045 kb on - strand, within SMc00592at 1266.204 kb on + strand, within SMc00592at 1266.228 kb on - strand, within SMc00592at 1266.228 kb on - strand, within SMc00592at 1266.309 kb on + strand, within SMc00592at 1266.310 kb on - strand, within SMc00592at 1266.310 kb on - strand, within SMc00592at 1266.310 kb on - strand, within SMc00592at 1266.310 kb on - strand, within SMc00592at 1266.329 kb on + strand, within SMc00592at 1266.329 kb on + strand, within SMc00592at 1266.329 kb on + strand, within SMc00592at 1266.330 kb on - strand, within SMc00592at 1266.330 kb on - strand, within SMc00592at 1266.330 kb on - strand, within SMc00592at 1266.362 kb on + strand, within SMc00592at 1266.362 kb on + strand, within SMc00592at 1266.363 kb on - strand, within SMc00592at 1266.431 kb on - strand, within SMc00592at 1266.473 kb on + strand, within SMc00592at 1266.473 kb on + strand, within SMc00592at 1266.474 kb on - strand, within SMc00592at 1266.474 kb on - strand, within SMc00592at 1266.474 kb on - strand, within SMc00592at 1266.474 kb on - strand, within SMc00592at 1266.754 kb on + strand, within SMc00593at 1266.754 kb on + strand, within SMc00593at 1266.870 kb on + strand, within SMc00593at 1267.018 kb on + strand, within SMc00593at 1267.055 kb on - strand, within SMc00593at 1267.108 kb on - strand, within SMc00593at 1267.227 kb on + strandat 1267.301 kb on + strandat 1267.301 kb on + strandat 1267.301 kb on + strandat 1267.302 kb on - strandat 1267.302 kb on - strandat 1267.302 kb on - strandat 1267.556 kb on + strand, within SMc00594at 1267.556 kb on + strand, within SMc00594at 1267.557 kb on - strand, within SMc00594at 1267.557 kb on - strand, within SMc00594at 1267.571 kb on + strand, within SMc00594at 1267.721 kb on + strand, within SMc00594at 1267.722 kb on - strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.883 kb on + strand, within SMc00594at 1267.884 kb on - strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.885 kb on + strand, within SMc00594at 1267.886 kb on - strand, within SMc00594at 1267.886 kb on - strand, within SMc00594

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,265,865 + SMc00592 0.67 -0.1
1,265,896 - SMc00592 0.68 -0.2
1,265,907 - SMc00592 0.68 -0.0
1,265,909 + SMc00592 0.69 +0.1
1,265,909 + SMc00592 0.69 +0.1
1,265,910 - SMc00592 0.69 -0.2
1,265,910 - SMc00592 0.69 +0.3
1,265,910 - SMc00592 0.69 -1.3
1,265,910 - SMc00592 0.69 -0.5
1,266,026 + SMc00592 0.73 -0.3
1,266,027 - SMc00592 0.73 +0.0
1,266,044 + SMc00592 0.74 -1.0
1,266,044 + SMc00592 0.74 -0.8
1,266,044 + SMc00592 0.74 +0.3
1,266,045 - SMc00592 0.74 -0.6
1,266,045 - SMc00592 0.74 +0.2
1,266,045 - SMc00592 0.74 -0.3
1,266,204 + SMc00592 0.80 -0.4
1,266,228 - SMc00592 0.81 +0.3
1,266,228 - SMc00592 0.81 -0.2
1,266,309 + SMc00592 0.84 +0.5
1,266,310 - SMc00592 0.84 +0.3
1,266,310 - SMc00592 0.84 +0.3
1,266,310 - SMc00592 0.84 -0.1
1,266,310 - SMc00592 0.84 -0.2
1,266,329 + SMc00592 0.84 -0.9
1,266,329 + SMc00592 0.84 -0.5
1,266,329 + SMc00592 0.84 +0.3
1,266,330 - SMc00592 0.84 -0.2
1,266,330 - SMc00592 0.84 -0.5
1,266,330 - SMc00592 0.84 +1.4
1,266,362 + SMc00592 0.86 -0.6
1,266,362 + SMc00592 0.86 +0.4
1,266,363 - SMc00592 0.86 +0.2
1,266,431 - SMc00592 0.88 +0.2
1,266,473 + SMc00592 0.90 -1.5
1,266,473 + SMc00592 0.90 +0.3
1,266,474 - SMc00592 0.90 -0.2
1,266,474 - SMc00592 0.90 +0.3
1,266,474 - SMc00592 0.90 -0.0
1,266,474 - SMc00592 0.90 -0.4
1,266,754 + SMc00593 0.13 +0.5
1,266,754 + SMc00593 0.13 -0.0
1,266,870 + SMc00593 0.36 -0.3
1,267,018 + SMc00593 0.65 -0.1
1,267,055 - SMc00593 0.72 +0.6
1,267,108 - SMc00593 0.82 +1.3
1,267,227 + +0.5
1,267,301 + +0.1
1,267,301 + -0.2
1,267,301 + -1.0
1,267,302 - -0.2
1,267,302 - -0.3
1,267,302 - -0.5
1,267,556 + SMc00594 0.32 -0.1
1,267,556 + SMc00594 0.32 +0.5
1,267,557 - SMc00594 0.32 +0.1
1,267,557 - SMc00594 0.32 +0.0
1,267,571 + SMc00594 0.34 -0.2
1,267,721 + SMc00594 0.56 +0.4
1,267,722 - SMc00594 0.56 +0.4
1,267,883 + SMc00594 0.80 -0.1
1,267,883 + SMc00594 0.80 -0.0
1,267,883 + SMc00594 0.80 -0.1
1,267,883 + SMc00594 0.80 +0.1
1,267,884 - SMc00594 0.80 +0.5
1,267,885 + SMc00594 0.80 +0.6
1,267,885 + SMc00594 0.80 -0.1
1,267,885 + SMc00594 0.80 -0.0
1,267,885 + SMc00594 0.80 -0.5
1,267,886 - SMc00594 0.80 +0.6
1,267,886 - SMc00594 0.80 -1.0

Or see this region's nucleotide sequence