Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00592 and SMc00593 overlap by 60 nucleotides SMc00593 and SMc00594 are separated by 135 nucleotides SMc00594 and SMc00595 are separated by 102 nucleotides
SMc00592: SMc00592 - hypothetical protein, at 1,264,088 to 1,266,745
SMc00592
SMc00593: SMc00593 - hypothetical protein, at 1,266,686 to 1,267,198
SMc00593
SMc00594: SMc00594 - beta-etherase (BETA-aryl ether cleaving enzyme) protein, at 1,267,334 to 1,268,023
SMc00594
SMc00595: SMc00595 - nucleoside diphosphate kinase, at 1,268,126 to 1,268,548
SMc00595
Position (kb)
1266
1267
1268 Strain fitness (log2 ratio)
-1
0
1 at 1265.865 kb on + strand, within SMc00592 at 1265.896 kb on - strand, within SMc00592 at 1265.907 kb on - strand, within SMc00592 at 1265.909 kb on + strand, within SMc00592 at 1265.909 kb on + strand, within SMc00592 at 1265.910 kb on - strand, within SMc00592 at 1265.910 kb on - strand, within SMc00592 at 1265.910 kb on - strand, within SMc00592 at 1265.910 kb on - strand, within SMc00592 at 1266.026 kb on + strand, within SMc00592 at 1266.027 kb on - strand, within SMc00592 at 1266.044 kb on + strand, within SMc00592 at 1266.044 kb on + strand, within SMc00592 at 1266.044 kb on + strand, within SMc00592 at 1266.045 kb on - strand, within SMc00592 at 1266.045 kb on - strand, within SMc00592 at 1266.045 kb on - strand, within SMc00592 at 1266.204 kb on + strand, within SMc00592 at 1266.228 kb on - strand, within SMc00592 at 1266.228 kb on - strand, within SMc00592 at 1266.309 kb on + strand, within SMc00592 at 1266.310 kb on - strand, within SMc00592 at 1266.310 kb on - strand, within SMc00592 at 1266.310 kb on - strand, within SMc00592 at 1266.310 kb on - strand, within SMc00592 at 1266.329 kb on + strand, within SMc00592 at 1266.329 kb on + strand, within SMc00592 at 1266.329 kb on + strand, within SMc00592 at 1266.330 kb on - strand, within SMc00592 at 1266.330 kb on - strand, within SMc00592 at 1266.330 kb on - strand, within SMc00592 at 1266.362 kb on + strand, within SMc00592 at 1266.362 kb on + strand, within SMc00592 at 1266.363 kb on - strand, within SMc00592 at 1266.431 kb on - strand, within SMc00592 at 1266.473 kb on + strand, within SMc00592 at 1266.473 kb on + strand, within SMc00592 at 1266.474 kb on - strand, within SMc00592 at 1266.474 kb on - strand, within SMc00592 at 1266.474 kb on - strand, within SMc00592 at 1266.474 kb on - strand, within SMc00592 at 1266.754 kb on + strand, within SMc00593 at 1266.754 kb on + strand, within SMc00593 at 1266.870 kb on + strand, within SMc00593 at 1267.018 kb on + strand, within SMc00593 at 1267.055 kb on - strand, within SMc00593 at 1267.108 kb on - strand, within SMc00593 at 1267.227 kb on + strand at 1267.301 kb on + strand at 1267.301 kb on + strand at 1267.301 kb on + strand at 1267.302 kb on - strand at 1267.302 kb on - strand at 1267.302 kb on - strand at 1267.556 kb on + strand, within SMc00594 at 1267.556 kb on + strand, within SMc00594 at 1267.557 kb on - strand, within SMc00594 at 1267.557 kb on - strand, within SMc00594 at 1267.571 kb on + strand, within SMc00594 at 1267.721 kb on + strand, within SMc00594 at 1267.722 kb on - strand, within SMc00594 at 1267.883 kb on + strand, within SMc00594 at 1267.883 kb on + strand, within SMc00594 at 1267.883 kb on + strand, within SMc00594 at 1267.883 kb on + strand, within SMc00594 at 1267.884 kb on - strand, within SMc00594 at 1267.885 kb on + strand, within SMc00594 at 1267.885 kb on + strand, within SMc00594 at 1267.885 kb on + strand, within SMc00594 at 1267.885 kb on + strand, within SMc00594 at 1267.886 kb on - strand, within SMc00594 at 1267.886 kb on - strand, within SMc00594
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,265,865 + SMc00592 0.67 -0.1 1,265,896 - SMc00592 0.68 -0.2 1,265,907 - SMc00592 0.68 -0.0 1,265,909 + SMc00592 0.69 +0.1 1,265,909 + SMc00592 0.69 +0.1 1,265,910 - SMc00592 0.69 -0.2 1,265,910 - SMc00592 0.69 +0.3 1,265,910 - SMc00592 0.69 -1.3 1,265,910 - SMc00592 0.69 -0.5 1,266,026 + SMc00592 0.73 -0.3 1,266,027 - SMc00592 0.73 +0.0 1,266,044 + SMc00592 0.74 -1.0 1,266,044 + SMc00592 0.74 -0.8 1,266,044 + SMc00592 0.74 +0.3 1,266,045 - SMc00592 0.74 -0.6 1,266,045 - SMc00592 0.74 +0.2 1,266,045 - SMc00592 0.74 -0.3 1,266,204 + SMc00592 0.80 -0.4 1,266,228 - SMc00592 0.81 +0.3 1,266,228 - SMc00592 0.81 -0.2 1,266,309 + SMc00592 0.84 +0.5 1,266,310 - SMc00592 0.84 +0.3 1,266,310 - SMc00592 0.84 +0.3 1,266,310 - SMc00592 0.84 -0.1 1,266,310 - SMc00592 0.84 -0.2 1,266,329 + SMc00592 0.84 -0.9 1,266,329 + SMc00592 0.84 -0.5 1,266,329 + SMc00592 0.84 +0.3 1,266,330 - SMc00592 0.84 -0.2 1,266,330 - SMc00592 0.84 -0.5 1,266,330 - SMc00592 0.84 +1.4 1,266,362 + SMc00592 0.86 -0.6 1,266,362 + SMc00592 0.86 +0.4 1,266,363 - SMc00592 0.86 +0.2 1,266,431 - SMc00592 0.88 +0.2 1,266,473 + SMc00592 0.90 -1.5 1,266,473 + SMc00592 0.90 +0.3 1,266,474 - SMc00592 0.90 -0.2 1,266,474 - SMc00592 0.90 +0.3 1,266,474 - SMc00592 0.90 -0.0 1,266,474 - SMc00592 0.90 -0.4 1,266,754 + SMc00593 0.13 +0.5 1,266,754 + SMc00593 0.13 -0.0 1,266,870 + SMc00593 0.36 -0.3 1,267,018 + SMc00593 0.65 -0.1 1,267,055 - SMc00593 0.72 +0.6 1,267,108 - SMc00593 0.82 +1.3 1,267,227 + +0.5 1,267,301 + +0.1 1,267,301 + -0.2 1,267,301 + -1.0 1,267,302 - -0.2 1,267,302 - -0.3 1,267,302 - -0.5 1,267,556 + SMc00594 0.32 -0.1 1,267,556 + SMc00594 0.32 +0.5 1,267,557 - SMc00594 0.32 +0.1 1,267,557 - SMc00594 0.32 +0.0 1,267,571 + SMc00594 0.34 -0.2 1,267,721 + SMc00594 0.56 +0.4 1,267,722 - SMc00594 0.56 +0.4 1,267,883 + SMc00594 0.80 -0.1 1,267,883 + SMc00594 0.80 -0.0 1,267,883 + SMc00594 0.80 -0.1 1,267,883 + SMc00594 0.80 +0.1 1,267,884 - SMc00594 0.80 +0.5 1,267,885 + SMc00594 0.80 +0.6 1,267,885 + SMc00594 0.80 -0.1 1,267,885 + SMc00594 0.80 -0.0 1,267,885 + SMc00594 0.80 -0.5 1,267,886 - SMc00594 0.80 +0.6 1,267,886 - SMc00594 0.80 -1.0
Or see this region's nucleotide sequence