Strain Fitness in Sinorhizobium meliloti 1021 around SMc00458

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00123 and SMc00065 are separated by 552 nucleotidesSMc00065 and SMc00458 are separated by 40 nucleotidesSMc00458 and SMc00129 overlap by 11 nucleotides SMc00123: SMc00123 - hypothetical protein, at 1,103,797 to 1,104,132 SMc00123 SMc00065: SMc00065 - signal peptide protein, at 1,104,685 to 1,104,936 SMc00065 SMc00458: SMc00458 - transcriptional regulator, at 1,104,977 to 1,105,648 SMc00458 SMc00129: SMc00129 - sensor histidine kinase, at 1,105,638 to 1,107,023 SMc00129 Position (kb) 1104 1105 1106Strain fitness (log2 ratio) -1 0 1 2at 1104.143 kb on + strandat 1104.143 kb on + strandat 1104.931 kb on - strandat 1104.931 kb on - strandat 1104.931 kb on - strandat 1104.931 kb on - strandat 1104.931 kb on - strandat 1104.935 kb on - strandat 1104.935 kb on - strandat 1104.935 kb on - strandat 1104.935 kb on - strandat 1104.935 kb on - strandat 1104.935 kb on - strandat 1105.049 kb on + strand, within SMc00458at 1105.049 kb on + strand, within SMc00458at 1105.050 kb on - strand, within SMc00458at 1105.050 kb on - strand, within SMc00458at 1105.067 kb on + strand, within SMc00458at 1105.068 kb on - strand, within SMc00458at 1105.068 kb on - strand, within SMc00458at 1105.089 kb on - strand, within SMc00458at 1105.089 kb on - strand, within SMc00458at 1105.089 kb on - strand, within SMc00458at 1105.089 kb on - strand, within SMc00458at 1105.092 kb on + strand, within SMc00458at 1105.093 kb on - strand, within SMc00458at 1105.093 kb on - strand, within SMc00458at 1105.110 kb on - strand, within SMc00458at 1105.120 kb on - strand, within SMc00458at 1105.130 kb on - strand, within SMc00458at 1105.131 kb on + strand, within SMc00458at 1105.131 kb on + strand, within SMc00458at 1105.131 kb on + strand, within SMc00458at 1105.131 kb on + strand, within SMc00458at 1105.131 kb on + strand, within SMc00458at 1105.131 kb on + strand, within SMc00458at 1105.131 kb on + strand, within SMc00458at 1105.132 kb on - strand, within SMc00458at 1105.132 kb on - strand, within SMc00458at 1105.132 kb on - strand, within SMc00458at 1105.268 kb on + strand, within SMc00458at 1105.268 kb on + strand, within SMc00458at 1105.269 kb on - strand, within SMc00458at 1105.269 kb on - strand, within SMc00458at 1105.454 kb on + strand, within SMc00458at 1105.468 kb on + strand, within SMc00458at 1105.469 kb on - strand, within SMc00458at 1105.469 kb on - strand, within SMc00458at 1105.511 kb on + strand, within SMc00458at 1105.511 kb on + strand, within SMc00458at 1105.511 kb on + strand, within SMc00458at 1105.511 kb on + strand, within SMc00458at 1105.511 kb on + strand, within SMc00458at 1105.512 kb on - strand, within SMc00458at 1105.512 kb on - strand, within SMc00458at 1105.512 kb on - strand, within SMc00458at 1105.646 kb on + strandat 1105.646 kb on + strandat 1105.646 kb on + strandat 1105.646 kb on + strandat 1105.646 kb on + strandat 1105.646 kb on + strandat 1105.647 kb on - strandat 1105.785 kb on + strand, within SMc00129at 1105.785 kb on + strand, within SMc00129at 1105.785 kb on + strand, within SMc00129at 1105.786 kb on - strand, within SMc00129at 1105.786 kb on - strand, within SMc00129at 1105.786 kb on - strand, within SMc00129at 1105.998 kb on + strand, within SMc00129at 1105.999 kb on - strand, within SMc00129at 1105.999 kb on - strand, within SMc00129at 1106.010 kb on + strand, within SMc00129at 1106.011 kb on - strand, within SMc00129at 1106.011 kb on - strand, within SMc00129at 1106.243 kb on - strand, within SMc00129at 1106.514 kb on + strand, within SMc00129at 1106.515 kb on - strand, within SMc00129

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,104,143 + -0.0
1,104,143 + +0.9
1,104,931 - +0.9
1,104,931 - -0.2
1,104,931 - +0.2
1,104,931 - +0.4
1,104,931 - +0.7
1,104,935 - +0.3
1,104,935 - +0.0
1,104,935 - +1.2
1,104,935 - -0.1
1,104,935 - +0.4
1,104,935 - -0.3
1,105,049 + SMc00458 0.11 +0.4
1,105,049 + SMc00458 0.11 +0.4
1,105,050 - SMc00458 0.11 +0.4
1,105,050 - SMc00458 0.11 -0.0
1,105,067 + SMc00458 0.13 +0.5
1,105,068 - SMc00458 0.14 +1.1
1,105,068 - SMc00458 0.14 +0.7
1,105,089 - SMc00458 0.17 +0.3
1,105,089 - SMc00458 0.17 +0.8
1,105,089 - SMc00458 0.17 +0.4
1,105,089 - SMc00458 0.17 +1.8
1,105,092 + SMc00458 0.17 +0.9
1,105,093 - SMc00458 0.17 +0.3
1,105,093 - SMc00458 0.17 +0.2
1,105,110 - SMc00458 0.20 +0.6
1,105,120 - SMc00458 0.21 +0.2
1,105,130 - SMc00458 0.23 +0.6
1,105,131 + SMc00458 0.23 +0.0
1,105,131 + SMc00458 0.23 +0.4
1,105,131 + SMc00458 0.23 +0.5
1,105,131 + SMc00458 0.23 +0.6
1,105,131 + SMc00458 0.23 +0.5
1,105,131 + SMc00458 0.23 +0.1
1,105,131 + SMc00458 0.23 +0.3
1,105,132 - SMc00458 0.23 +1.0
1,105,132 - SMc00458 0.23 +0.0
1,105,132 - SMc00458 0.23 +0.6
1,105,268 + SMc00458 0.43 +0.3
1,105,268 + SMc00458 0.43 +0.1
1,105,269 - SMc00458 0.43 +0.6
1,105,269 - SMc00458 0.43 +1.1
1,105,454 + SMc00458 0.71 +0.0
1,105,468 + SMc00458 0.73 +0.7
1,105,469 - SMc00458 0.73 +0.3
1,105,469 - SMc00458 0.73 +0.3
1,105,511 + SMc00458 0.79 +0.3
1,105,511 + SMc00458 0.79 +0.7
1,105,511 + SMc00458 0.79 +0.5
1,105,511 + SMc00458 0.79 +0.2
1,105,511 + SMc00458 0.79 +0.3
1,105,512 - SMc00458 0.80 +1.0
1,105,512 - SMc00458 0.80 +0.8
1,105,512 - SMc00458 0.80 +0.3
1,105,646 + +0.2
1,105,646 + +0.1
1,105,646 + -0.0
1,105,646 + +0.3
1,105,646 + +0.4
1,105,646 + -0.2
1,105,647 - +0.8
1,105,785 + SMc00129 0.11 +0.5
1,105,785 + SMc00129 0.11 -1.0
1,105,785 + SMc00129 0.11 +0.1
1,105,786 - SMc00129 0.11 +0.4
1,105,786 - SMc00129 0.11 +0.1
1,105,786 - SMc00129 0.11 +0.1
1,105,998 + SMc00129 0.26 +0.1
1,105,999 - SMc00129 0.26 -0.5
1,105,999 - SMc00129 0.26 +0.4
1,106,010 + SMc00129 0.27 +0.4
1,106,011 - SMc00129 0.27 +0.5
1,106,011 - SMc00129 0.27 +0.6
1,106,243 - SMc00129 0.44 +0.3
1,106,514 + SMc00129 0.63 +0.1
1,106,515 - SMc00129 0.63 -0.0

Or see this region's nucleotide sequence