Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00123 and SMc00065 are separated by 552 nucleotides SMc00065 and SMc00458 are separated by 40 nucleotides SMc00458 and SMc00129 overlap by 11 nucleotides
SMc00123: SMc00123 - hypothetical protein, at 1,103,797 to 1,104,132
SMc00123
SMc00065: SMc00065 - signal peptide protein, at 1,104,685 to 1,104,936
SMc00065
SMc00458: SMc00458 - transcriptional regulator, at 1,104,977 to 1,105,648
SMc00458
SMc00129: SMc00129 - sensor histidine kinase, at 1,105,638 to 1,107,023
SMc00129
Position (kb)
1104
1105
1106 Strain fitness (log2 ratio)
-1
0
1
2 at 1104.143 kb on + strand at 1104.143 kb on + strand at 1104.931 kb on - strand at 1104.931 kb on - strand at 1104.931 kb on - strand at 1104.931 kb on - strand at 1104.931 kb on - strand at 1104.935 kb on - strand at 1104.935 kb on - strand at 1104.935 kb on - strand at 1104.935 kb on - strand at 1104.935 kb on - strand at 1104.935 kb on - strand at 1105.049 kb on + strand, within SMc00458 at 1105.049 kb on + strand, within SMc00458 at 1105.050 kb on - strand, within SMc00458 at 1105.050 kb on - strand, within SMc00458 at 1105.067 kb on + strand, within SMc00458 at 1105.068 kb on - strand, within SMc00458 at 1105.068 kb on - strand, within SMc00458 at 1105.089 kb on - strand, within SMc00458 at 1105.089 kb on - strand, within SMc00458 at 1105.089 kb on - strand, within SMc00458 at 1105.089 kb on - strand, within SMc00458 at 1105.092 kb on + strand, within SMc00458 at 1105.093 kb on - strand, within SMc00458 at 1105.093 kb on - strand, within SMc00458 at 1105.110 kb on - strand, within SMc00458 at 1105.120 kb on - strand, within SMc00458 at 1105.130 kb on - strand, within SMc00458 at 1105.131 kb on + strand, within SMc00458 at 1105.131 kb on + strand, within SMc00458 at 1105.131 kb on + strand, within SMc00458 at 1105.131 kb on + strand, within SMc00458 at 1105.131 kb on + strand, within SMc00458 at 1105.131 kb on + strand, within SMc00458 at 1105.131 kb on + strand, within SMc00458 at 1105.132 kb on - strand, within SMc00458 at 1105.132 kb on - strand, within SMc00458 at 1105.132 kb on - strand, within SMc00458 at 1105.268 kb on + strand, within SMc00458 at 1105.268 kb on + strand, within SMc00458 at 1105.269 kb on - strand, within SMc00458 at 1105.269 kb on - strand, within SMc00458 at 1105.454 kb on + strand, within SMc00458 at 1105.468 kb on + strand, within SMc00458 at 1105.469 kb on - strand, within SMc00458 at 1105.469 kb on - strand, within SMc00458 at 1105.511 kb on + strand, within SMc00458 at 1105.511 kb on + strand, within SMc00458 at 1105.511 kb on + strand, within SMc00458 at 1105.511 kb on + strand, within SMc00458 at 1105.511 kb on + strand, within SMc00458 at 1105.512 kb on - strand, within SMc00458 at 1105.512 kb on - strand, within SMc00458 at 1105.512 kb on - strand, within SMc00458 at 1105.646 kb on + strand at 1105.646 kb on + strand at 1105.646 kb on + strand at 1105.646 kb on + strand at 1105.646 kb on + strand at 1105.646 kb on + strand at 1105.647 kb on - strand at 1105.785 kb on + strand, within SMc00129 at 1105.785 kb on + strand, within SMc00129 at 1105.785 kb on + strand, within SMc00129 at 1105.786 kb on - strand, within SMc00129 at 1105.786 kb on - strand, within SMc00129 at 1105.786 kb on - strand, within SMc00129 at 1105.998 kb on + strand, within SMc00129 at 1105.999 kb on - strand, within SMc00129 at 1105.999 kb on - strand, within SMc00129 at 1106.010 kb on + strand, within SMc00129 at 1106.011 kb on - strand, within SMc00129 at 1106.011 kb on - strand, within SMc00129 at 1106.243 kb on - strand, within SMc00129 at 1106.514 kb on + strand, within SMc00129 at 1106.515 kb on - strand, within SMc00129
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,104,143 + -0.0 1,104,143 + +0.9 1,104,931 - +0.9 1,104,931 - -0.2 1,104,931 - +0.2 1,104,931 - +0.4 1,104,931 - +0.7 1,104,935 - +0.3 1,104,935 - +0.0 1,104,935 - +1.2 1,104,935 - -0.1 1,104,935 - +0.4 1,104,935 - -0.3 1,105,049 + SMc00458 0.11 +0.4 1,105,049 + SMc00458 0.11 +0.4 1,105,050 - SMc00458 0.11 +0.4 1,105,050 - SMc00458 0.11 -0.0 1,105,067 + SMc00458 0.13 +0.5 1,105,068 - SMc00458 0.14 +1.1 1,105,068 - SMc00458 0.14 +0.7 1,105,089 - SMc00458 0.17 +0.3 1,105,089 - SMc00458 0.17 +0.8 1,105,089 - SMc00458 0.17 +0.4 1,105,089 - SMc00458 0.17 +1.8 1,105,092 + SMc00458 0.17 +0.9 1,105,093 - SMc00458 0.17 +0.3 1,105,093 - SMc00458 0.17 +0.2 1,105,110 - SMc00458 0.20 +0.6 1,105,120 - SMc00458 0.21 +0.2 1,105,130 - SMc00458 0.23 +0.6 1,105,131 + SMc00458 0.23 +0.0 1,105,131 + SMc00458 0.23 +0.4 1,105,131 + SMc00458 0.23 +0.5 1,105,131 + SMc00458 0.23 +0.6 1,105,131 + SMc00458 0.23 +0.5 1,105,131 + SMc00458 0.23 +0.1 1,105,131 + SMc00458 0.23 +0.3 1,105,132 - SMc00458 0.23 +1.0 1,105,132 - SMc00458 0.23 +0.0 1,105,132 - SMc00458 0.23 +0.6 1,105,268 + SMc00458 0.43 +0.3 1,105,268 + SMc00458 0.43 +0.1 1,105,269 - SMc00458 0.43 +0.6 1,105,269 - SMc00458 0.43 +1.1 1,105,454 + SMc00458 0.71 +0.0 1,105,468 + SMc00458 0.73 +0.7 1,105,469 - SMc00458 0.73 +0.3 1,105,469 - SMc00458 0.73 +0.3 1,105,511 + SMc00458 0.79 +0.3 1,105,511 + SMc00458 0.79 +0.7 1,105,511 + SMc00458 0.79 +0.5 1,105,511 + SMc00458 0.79 +0.2 1,105,511 + SMc00458 0.79 +0.3 1,105,512 - SMc00458 0.80 +1.0 1,105,512 - SMc00458 0.80 +0.8 1,105,512 - SMc00458 0.80 +0.3 1,105,646 + +0.2 1,105,646 + +0.1 1,105,646 + -0.0 1,105,646 + +0.3 1,105,646 + +0.4 1,105,646 + -0.2 1,105,647 - +0.8 1,105,785 + SMc00129 0.11 +0.5 1,105,785 + SMc00129 0.11 -1.0 1,105,785 + SMc00129 0.11 +0.1 1,105,786 - SMc00129 0.11 +0.4 1,105,786 - SMc00129 0.11 +0.1 1,105,786 - SMc00129 0.11 +0.1 1,105,998 + SMc00129 0.26 +0.1 1,105,999 - SMc00129 0.26 -0.5 1,105,999 - SMc00129 0.26 +0.4 1,106,010 + SMc00129 0.27 +0.4 1,106,011 - SMc00129 0.27 +0.5 1,106,011 - SMc00129 0.27 +0.6 1,106,243 - SMc00129 0.44 +0.3 1,106,514 + SMc00129 0.63 +0.1 1,106,515 - SMc00129 0.63 -0.0
Or see this region's nucleotide sequence