Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00327 and SMc00328 are separated by 49 nucleotides SMc00328 and SMc00329 are separated by 377 nucleotides SMc00329 and SMc00330 are separated by 30 nucleotides SMc00330 and SMc00331 are separated by 63 nucleotides
SMc00327: SMc00327 - 3-oxoacyl-ACP synthase, at 281,606 to 282,826
SMc00327
SMc00328: SMc00328 - 3-hydroxydecanoyl-ACP dehydratase, at 282,876 to 283,391
SMc00328
SMc00329: SMc00329 - iron response regulator protein, at 283,769 to 284,191
SMc00329
SMc00330: SMc00330 - transmembrane protein, at 284,222 to 284,857
SMc00330
SMc00331: SMc00331 - hypothetical protein, at 284,921 to 285,928
SMc00331
Position (kb) 283
284
285 Strain fitness (log2 ratio) -1
0
1 at 283.437 kb on - strand at 283.437 kb on - strand at 283.516 kb on - strand at 283.533 kb on - strand at 283.696 kb on - strand at 283.715 kb on + strand at 283.716 kb on - strand at 283.750 kb on + strand at 284.018 kb on + strand, within SMc00329 at 284.018 kb on + strand, within SMc00329 at 284.019 kb on - strand, within SMc00329 at 284.019 kb on - strand, within SMc00329 at 284.160 kb on + strand at 284.409 kb on + strand, within SMc00330 at 284.556 kb on + strand, within SMc00330 at 284.585 kb on + strand, within SMc00330 at 284.585 kb on + strand, within SMc00330 at 284.898 kb on + strand at 284.898 kb on + strand at 284.898 kb on + strand at 284.899 kb on - strand at 284.899 kb on - strand at 284.899 kb on - strand at 284.899 kb on - strand at 284.902 kb on - strand at 284.958 kb on + strand at 284.958 kb on + strand at 285.118 kb on + strand, within SMc00331
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 283,437 - -1.1 283,437 - -0.7 283,516 - +1.4 283,533 - -0.4 283,696 - -0.2 283,715 + -0.4 283,716 - -0.2 283,750 + -0.1 284,018 + SMc00329 0.59 +0.1 284,018 + SMc00329 0.59 +0.4 284,019 - SMc00329 0.59 -0.2 284,019 - SMc00329 0.59 +0.7 284,160 + +0.6 284,409 + SMc00330 0.29 -0.7 284,556 + SMc00330 0.53 +0.4 284,585 + SMc00330 0.57 -0.3 284,585 + SMc00330 0.57 -0.0 284,898 + -0.9 284,898 + +0.2 284,898 + +0.2 284,899 - +0.6 284,899 - +0.0 284,899 - -0.5 284,899 - +0.0 284,902 - +0.4 284,958 + +0.2 284,958 + +0.0 285,118 + SMc00331 0.20 +1.2
Or see this region's nucleotide sequence