Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00023 and SMc05003 are separated by 80 nucleotides SMc05003 and SMc00024 overlap by 13 nucleotides SMc00024 and SMc00025 are separated by 197 nucleotides
SMc00023: SMc00023 - hypothetical protein, at 1,018,305 to 1,019,114
SMc00023
SMc05003: SMc05003 - hypothetical protein, at 1,019,195 to 1,019,416
SMc05003
SMc00024: SMc00024 - chromosome partition protein, at 1,019,404 to 1,022,874
SMc00024
SMc00025: SMc00025 - pyruvate phosphate dikinase, at 1,023,072 to 1,025,768
SMc00025
Position (kb)
1019
1020
1021
1022
1023 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1019.211 kb on + strand at 1019.212 kb on - strand at 1019.212 kb on - strand at 1019.569 kb on + strand at 1020.003 kb on + strand, within SMc00024 at 1020.003 kb on + strand, within SMc00024 at 1020.953 kb on + strand, within SMc00024 at 1021.118 kb on + strand, within SMc00024 at 1021.170 kb on - strand, within SMc00024 at 1022.164 kb on - strand, within SMc00024 at 1022.196 kb on + strand, within SMc00024 at 1022.197 kb on - strand, within SMc00024 at 1022.692 kb on + strand at 1022.692 kb on + strand at 1022.763 kb on + strand at 1022.942 kb on - strand at 1022.942 kb on - strand at 1022.943 kb on + strand at 1022.943 kb on + strand at 1022.943 kb on + strand at 1022.943 kb on + strand at 1022.944 kb on - strand at 1022.948 kb on + strand at 1022.948 kb on + strand at 1022.948 kb on + strand at 1022.948 kb on + strand at 1022.948 kb on + strand at 1022.948 kb on + strand at 1022.948 kb on + strand at 1022.948 kb on + strand at 1022.949 kb on - strand at 1022.949 kb on - strand at 1022.949 kb on - strand at 1022.949 kb on - strand at 1022.949 kb on - strand at 1023.007 kb on + strand at 1023.007 kb on + strand at 1023.086 kb on - strand at 1023.086 kb on - strand at 1023.086 kb on - strand at 1023.087 kb on + strand at 1023.087 kb on + strand at 1023.087 kb on + strand at 1023.087 kb on + strand at 1023.087 kb on + strand at 1023.087 kb on + strand at 1023.087 kb on + strand at 1023.087 kb on + strand at 1023.087 kb on + strand at 1023.088 kb on - strand at 1023.088 kb on - strand at 1023.090 kb on - strand at 1023.155 kb on + strand at 1023.231 kb on + strand at 1023.231 kb on + strand at 1023.231 kb on + strand at 1023.291 kb on - strand at 1023.501 kb on + strand, within SMc00025 at 1023.501 kb on + strand, within SMc00025 at 1023.502 kb on - strand, within SMc00025 at 1023.502 kb on - strand, within SMc00025 at 1023.502 kb on - strand, within SMc00025 at 1023.631 kb on - strand, within SMc00025 at 1023.748 kb on - strand, within SMc00025
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,019,211 + +0.6 1,019,212 - -0.1 1,019,212 - -0.5 1,019,569 + -0.9 1,020,003 + SMc00024 0.17 +1.9 1,020,003 + SMc00024 0.17 +0.1 1,020,953 + SMc00024 0.45 -0.4 1,021,118 + SMc00024 0.49 +0.6 1,021,170 - SMc00024 0.51 +0.3 1,022,164 - SMc00024 0.80 -0.1 1,022,196 + SMc00024 0.80 +2.3 1,022,197 - SMc00024 0.80 +0.7 1,022,692 + +0.2 1,022,692 + +0.2 1,022,763 + -0.1 1,022,942 - -0.9 1,022,942 - -1.7 1,022,943 + -0.7 1,022,943 + -0.2 1,022,943 + -0.4 1,022,943 + -0.0 1,022,944 - +0.9 1,022,948 + -0.0 1,022,948 + -0.2 1,022,948 + +0.3 1,022,948 + +0.4 1,022,948 + +0.1 1,022,948 + -0.4 1,022,948 + +0.6 1,022,948 + +0.4 1,022,949 - -0.5 1,022,949 - -0.3 1,022,949 - -0.4 1,022,949 - -0.3 1,022,949 - -0.0 1,023,007 + +0.3 1,023,007 + -0.2 1,023,086 - -2.3 1,023,086 - -0.9 1,023,086 - +0.9 1,023,087 + -0.8 1,023,087 + +0.9 1,023,087 + +0.3 1,023,087 + -2.3 1,023,087 + -0.5 1,023,087 + -1.2 1,023,087 + -1.2 1,023,087 + -1.9 1,023,087 + -0.0 1,023,088 - -0.3 1,023,088 - -0.9 1,023,090 - -1.4 1,023,155 + -0.6 1,023,231 + -0.8 1,023,231 + -0.5 1,023,231 + -1.2 1,023,291 - -0.9 1,023,501 + SMc00025 0.16 +0.6 1,023,501 + SMc00025 0.16 -1.0 1,023,502 - SMc00025 0.16 -1.2 1,023,502 - SMc00025 0.16 -0.4 1,023,502 - SMc00025 0.16 -1.6 1,023,631 - SMc00025 0.21 -1.6 1,023,748 - SMc00025 0.25 -0.5
Or see this region's nucleotide sequence