Strain Fitness in Sinorhizobium meliloti 1021 around SMc00024

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00023 and SMc05003 are separated by 80 nucleotidesSMc05003 and SMc00024 overlap by 13 nucleotidesSMc00024 and SMc00025 are separated by 197 nucleotides SMc00023: SMc00023 - hypothetical protein, at 1,018,305 to 1,019,114 SMc00023 SMc05003: SMc05003 - hypothetical protein, at 1,019,195 to 1,019,416 SMc05003 SMc00024: SMc00024 - chromosome partition protein, at 1,019,404 to 1,022,874 SMc00024 SMc00025: SMc00025 - pyruvate phosphate dikinase, at 1,023,072 to 1,025,768 SMc00025 Position (kb) 1019 1020 1021 1022 1023Strain fitness (log2 ratio) -2 -1 0 1 2at 1019.211 kb on + strandat 1019.212 kb on - strandat 1019.212 kb on - strandat 1019.569 kb on + strandat 1020.003 kb on + strand, within SMc00024at 1020.003 kb on + strand, within SMc00024at 1020.953 kb on + strand, within SMc00024at 1021.118 kb on + strand, within SMc00024at 1021.170 kb on - strand, within SMc00024at 1022.164 kb on - strand, within SMc00024at 1022.196 kb on + strand, within SMc00024at 1022.197 kb on - strand, within SMc00024at 1022.692 kb on + strandat 1022.692 kb on + strandat 1022.763 kb on + strandat 1022.942 kb on - strandat 1022.942 kb on - strandat 1022.943 kb on + strandat 1022.943 kb on + strandat 1022.943 kb on + strandat 1022.943 kb on + strandat 1022.944 kb on - strandat 1022.948 kb on + strandat 1022.948 kb on + strandat 1022.948 kb on + strandat 1022.948 kb on + strandat 1022.948 kb on + strandat 1022.948 kb on + strandat 1022.948 kb on + strandat 1022.948 kb on + strandat 1022.949 kb on - strandat 1022.949 kb on - strandat 1022.949 kb on - strandat 1022.949 kb on - strandat 1022.949 kb on - strandat 1023.007 kb on + strandat 1023.007 kb on + strandat 1023.086 kb on - strandat 1023.086 kb on - strandat 1023.086 kb on - strandat 1023.087 kb on + strandat 1023.087 kb on + strandat 1023.087 kb on + strandat 1023.087 kb on + strandat 1023.087 kb on + strandat 1023.087 kb on + strandat 1023.087 kb on + strandat 1023.087 kb on + strandat 1023.087 kb on + strandat 1023.088 kb on - strandat 1023.088 kb on - strandat 1023.090 kb on - strandat 1023.155 kb on + strandat 1023.231 kb on + strandat 1023.231 kb on + strandat 1023.231 kb on + strandat 1023.291 kb on - strandat 1023.501 kb on + strand, within SMc00025at 1023.501 kb on + strand, within SMc00025at 1023.502 kb on - strand, within SMc00025at 1023.502 kb on - strand, within SMc00025at 1023.502 kb on - strand, within SMc00025at 1023.631 kb on - strand, within SMc00025at 1023.748 kb on - strand, within SMc00025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,019,211 + +0.6
1,019,212 - -0.1
1,019,212 - -0.5
1,019,569 + -0.9
1,020,003 + SMc00024 0.17 +1.9
1,020,003 + SMc00024 0.17 +0.1
1,020,953 + SMc00024 0.45 -0.4
1,021,118 + SMc00024 0.49 +0.6
1,021,170 - SMc00024 0.51 +0.3
1,022,164 - SMc00024 0.80 -0.1
1,022,196 + SMc00024 0.80 +2.3
1,022,197 - SMc00024 0.80 +0.7
1,022,692 + +0.2
1,022,692 + +0.2
1,022,763 + -0.1
1,022,942 - -0.9
1,022,942 - -1.7
1,022,943 + -0.7
1,022,943 + -0.2
1,022,943 + -0.4
1,022,943 + -0.0
1,022,944 - +0.9
1,022,948 + -0.0
1,022,948 + -0.2
1,022,948 + +0.3
1,022,948 + +0.4
1,022,948 + +0.1
1,022,948 + -0.4
1,022,948 + +0.6
1,022,948 + +0.4
1,022,949 - -0.5
1,022,949 - -0.3
1,022,949 - -0.4
1,022,949 - -0.3
1,022,949 - -0.0
1,023,007 + +0.3
1,023,007 + -0.2
1,023,086 - -2.3
1,023,086 - -0.9
1,023,086 - +0.9
1,023,087 + -0.8
1,023,087 + +0.9
1,023,087 + +0.3
1,023,087 + -2.3
1,023,087 + -0.5
1,023,087 + -1.2
1,023,087 + -1.2
1,023,087 + -1.9
1,023,087 + -0.0
1,023,088 - -0.3
1,023,088 - -0.9
1,023,090 - -1.4
1,023,155 + -0.6
1,023,231 + -0.8
1,023,231 + -0.5
1,023,231 + -1.2
1,023,291 - -0.9
1,023,501 + SMc00025 0.16 +0.6
1,023,501 + SMc00025 0.16 -1.0
1,023,502 - SMc00025 0.16 -1.2
1,023,502 - SMc00025 0.16 -0.4
1,023,502 - SMc00025 0.16 -1.6
1,023,631 - SMc00025 0.21 -1.6
1,023,748 - SMc00025 0.25 -0.5

Or see this region's nucleotide sequence