Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00068 and SMc00001 are separated by 210 nucleotides SMc00001 and SMc00069 are separated by 23 nucleotides SMc00069 and SMc00002 are separated by 141 nucleotides
SMc00068: SMc00068 - hypothetical protein, at 981,288 to 982,517
SMc00068
SMc00001: SMc00001 - hypothetical protein, at 982,728 to 983,786
SMc00001
SMc00069: SMc00069 - pyridoxamine 5'-phosphate oxidase, at 983,810 to 984,430
SMc00069
SMc00002: SMc00002 - hypothetical protein, at 984,572 to 985,027
SMc00002
Position (kb) 982
983
984 Strain fitness (log2 ratio) -2
-1
0
1
2 at 981.884 kb on + strand, within SMc00068 at 981.885 kb on - strand, within SMc00068 at 981.901 kb on + strand, within SMc00068 at 981.976 kb on + strand, within SMc00068 at 981.988 kb on + strand, within SMc00068 at 981.988 kb on + strand, within SMc00068 at 981.989 kb on - strand, within SMc00068 at 982.204 kb on + strand, within SMc00068 at 982.204 kb on + strand at 982.205 kb on - strand, within SMc00068 at 982.342 kb on + strand, within SMc00068 at 982.343 kb on - strand, within SMc00068 at 982.343 kb on - strand, within SMc00068 at 982.343 kb on - strand, within SMc00068 at 982.343 kb on - strand, within SMc00068 at 982.343 kb on - strand, within SMc00068 at 982.343 kb on - strand, within SMc00068 at 982.497 kb on - strand at 982.587 kb on - strand at 982.668 kb on - strand at 983.058 kb on + strand, within SMc00001 at 983.066 kb on + strand, within SMc00001 at 983.137 kb on - strand, within SMc00001 at 983.236 kb on + strand, within SMc00001 at 983.237 kb on - strand, within SMc00001 at 983.290 kb on - strand, within SMc00001 at 983.333 kb on + strand, within SMc00001 at 983.334 kb on - strand, within SMc00001 at 983.568 kb on + strand, within SMc00001 at 983.727 kb on + strand at 983.727 kb on + strand at 983.728 kb on - strand at 983.728 kb on - strand at 984.431 kb on - strand at 984.501 kb on + strand at 984.502 kb on - strand at 984.502 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.505 kb on - strand at 984.582 kb on + strand at 984.582 kb on + strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.583 kb on - strand at 984.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 981,884 + SMc00068 0.48 -0.3 981,885 - SMc00068 0.49 +0.1 981,901 + SMc00068 0.50 -0.1 981,976 + SMc00068 0.56 +0.0 981,988 + SMc00068 0.57 +0.4 981,988 + SMc00068 0.57 -0.1 981,989 - SMc00068 0.57 -0.3 982,204 + SMc00068 0.74 -0.0 982,204 + +2.4 982,205 - SMc00068 0.75 +0.1 982,342 + SMc00068 0.86 -0.6 982,343 - SMc00068 0.86 -2.2 982,343 - SMc00068 0.86 +0.0 982,343 - SMc00068 0.86 +1.4 982,343 - SMc00068 0.86 -0.3 982,343 - SMc00068 0.86 +0.5 982,343 - SMc00068 0.86 +1.9 982,497 - -0.4 982,587 - -0.6 982,668 - -0.6 983,058 + SMc00001 0.31 -0.2 983,066 + SMc00001 0.32 +0.3 983,137 - SMc00001 0.39 +2.2 983,236 + SMc00001 0.48 +0.7 983,237 - SMc00001 0.48 +0.4 983,290 - SMc00001 0.53 +0.4 983,333 + SMc00001 0.57 -0.1 983,334 - SMc00001 0.57 +0.1 983,568 + SMc00001 0.79 +1.4 983,727 + -1.5 983,727 + -0.5 983,728 - +1.0 983,728 - +0.1 984,431 - -0.2 984,501 + +0.2 984,502 - -0.2 984,502 - +0.2 984,505 - +0.6 984,505 - -1.6 984,505 - +0.1 984,505 - +0.6 984,582 + -1.0 984,582 + -0.5 984,583 - -0.2 984,583 - +0.2 984,583 - +0.7 984,583 - +0.1
Or see this region's nucleotide sequence