Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21591

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21589 and SM_b21590 overlap by 4 nucleotidesSM_b21590 and SM_b21591 are separated by 17 nucleotidesSM_b21591 and SM_b21592 are separated by 145 nucleotides SM_b21589: SM_b21589 - sugar uptake ABC transporter permease, at 1,129,514 to 1,130,539 _b21589 SM_b21590: SM_b21590 - inner membrane ABC transporter permease YjfF, at 1,130,536 to 1,131,504 _b21590 SM_b21591: SM_b21591 - GntR family transcriptional regulator, at 1,131,522 to 1,132,256 _b21591 SM_b21592: SM_b21592 - sugar uptake ABC transporter ATP-binding protein, at 1,132,402 to 1,133,553 _b21592 Position (kb) 1131 1132 1133Strain fitness (log2 ratio) -1 0 1at 1130.611 kb on + strandat 1130.866 kb on + strand, within SM_b21590at 1130.866 kb on + strand, within SM_b21590at 1130.866 kb on + strand, within SM_b21590at 1130.867 kb on - strand, within SM_b21590at 1130.992 kb on + strand, within SM_b21590at 1131.099 kb on + strand, within SM_b21590at 1131.099 kb on + strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.100 kb on - strand, within SM_b21590at 1131.103 kb on + strand, within SM_b21590at 1131.104 kb on - strand, within SM_b21590at 1131.104 kb on - strand, within SM_b21590at 1131.104 kb on - strand, within SM_b21590at 1131.176 kb on - strand, within SM_b21590at 1131.176 kb on - strand, within SM_b21590at 1131.227 kb on - strand, within SM_b21590at 1131.227 kb on - strand, within SM_b21590at 1131.229 kb on - strand, within SM_b21590at 1131.229 kb on - strand, within SM_b21590at 1131.376 kb on + strand, within SM_b21590at 1131.376 kb on + strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.377 kb on - strand, within SM_b21590at 1131.668 kb on - strand, within SM_b21591at 1131.870 kb on + strand, within SM_b21591at 1132.137 kb on - strand, within SM_b21591at 1132.343 kb on + strandat 1132.343 kb on + strandat 1132.549 kb on - strand, within SM_b21592at 1132.619 kb on - strand, within SM_b21592at 1132.622 kb on + strand, within SM_b21592at 1132.622 kb on + strand, within SM_b21592at 1132.622 kb on + strand, within SM_b21592at 1132.623 kb on - strand, within SM_b21592at 1132.623 kb on - strand, within SM_b21592at 1132.623 kb on - strand, within SM_b21592at 1132.662 kb on + strand, within SM_b21592at 1132.886 kb on + strand, within SM_b21592at 1132.887 kb on - strand, within SM_b21592at 1132.985 kb on + strand, within SM_b21592at 1132.986 kb on - strand, within SM_b21592at 1132.986 kb on - strand, within SM_b21592at 1133.037 kb on + strand, within SM_b21592at 1133.037 kb on + strand, within SM_b21592at 1133.037 kb on + strand, within SM_b21592at 1133.038 kb on - strand, within SM_b21592at 1133.246 kb on - strand, within SM_b21592

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,130,611 + +0.5
1,130,866 + SM_b21590 0.34 +0.0
1,130,866 + SM_b21590 0.34 -0.1
1,130,866 + SM_b21590 0.34 -0.0
1,130,867 - SM_b21590 0.34 -0.4
1,130,992 + SM_b21590 0.47 -0.2
1,131,099 + SM_b21590 0.58 +0.6
1,131,099 + SM_b21590 0.58 +0.1
1,131,100 - SM_b21590 0.58 +0.3
1,131,100 - SM_b21590 0.58 +0.1
1,131,100 - SM_b21590 0.58 +0.0
1,131,100 - SM_b21590 0.58 -0.2
1,131,100 - SM_b21590 0.58 -0.2
1,131,103 + SM_b21590 0.59 -0.1
1,131,104 - SM_b21590 0.59 +0.0
1,131,104 - SM_b21590 0.59 +0.1
1,131,104 - SM_b21590 0.59 -1.2
1,131,176 - SM_b21590 0.66 -1.1
1,131,176 - SM_b21590 0.66 +0.9
1,131,227 - SM_b21590 0.71 -0.1
1,131,227 - SM_b21590 0.71 -0.5
1,131,229 - SM_b21590 0.72 -0.5
1,131,229 - SM_b21590 0.72 -0.1
1,131,376 + SM_b21590 0.87 -0.0
1,131,376 + SM_b21590 0.87 +0.2
1,131,377 - SM_b21590 0.87 -0.3
1,131,377 - SM_b21590 0.87 -0.5
1,131,377 - SM_b21590 0.87 -0.6
1,131,377 - SM_b21590 0.87 -1.1
1,131,377 - SM_b21590 0.87 -1.1
1,131,377 - SM_b21590 0.87 +0.3
1,131,377 - SM_b21590 0.87 -0.1
1,131,377 - SM_b21590 0.87 -0.4
1,131,668 - SM_b21591 0.20 +0.7
1,131,870 + SM_b21591 0.47 +0.2
1,132,137 - SM_b21591 0.84 +0.7
1,132,343 + +0.4
1,132,343 + +0.7
1,132,549 - SM_b21592 0.13 +0.2
1,132,619 - SM_b21592 0.19 +0.1
1,132,622 + SM_b21592 0.19 +0.3
1,132,622 + SM_b21592 0.19 +0.0
1,132,622 + SM_b21592 0.19 -0.0
1,132,623 - SM_b21592 0.19 -0.3
1,132,623 - SM_b21592 0.19 +0.0
1,132,623 - SM_b21592 0.19 +1.4
1,132,662 + SM_b21592 0.23 -0.8
1,132,886 + SM_b21592 0.42 -0.1
1,132,887 - SM_b21592 0.42 +0.6
1,132,985 + SM_b21592 0.51 +0.8
1,132,986 - SM_b21592 0.51 -0.5
1,132,986 - SM_b21592 0.51 -0.2
1,133,037 + SM_b21592 0.55 -0.0
1,133,037 + SM_b21592 0.55 +0.8
1,133,037 + SM_b21592 0.55 +0.3
1,133,038 - SM_b21592 0.55 -0.7
1,133,246 - SM_b21592 0.73 +0.1

Or see this region's nucleotide sequence