Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21488

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21487 and SM_b21488 are separated by 37 nucleotidesSM_b21488 and SM_b21489 overlap by 4 nucleotidesSM_b21489 and SM_b22024 overlap by 4 nucleotides SM_b21487: SM_b21487 - cytochrome o ubiquinol oxidase subunit II, at 1,408,291 to 1,409,451 _b21487 SM_b21488: SM_b21488 - cytochrome o ubiquinol oxidase subunit I, at 1,409,489 to 1,411,498 _b21488 SM_b21489: SM_b21489 - cytochrome O ubiquinol oxidase subunit III, at 1,411,495 to 1,412,127 _b21489 SM_b22024: SM_b22024 - cytochrome O ubiquinol oxidase CyoD, at 1,412,124 to 1,412,525 _b22024 Position (kb) 1409 1410 1411 1412Strain fitness (log2 ratio) -2 -1 0 1at 1408.516 kb on + strand, within SM_b21487at 1408.517 kb on - strand, within SM_b21487at 1408.517 kb on - strand, within SM_b21487at 1408.517 kb on - strand, within SM_b21487at 1408.834 kb on + strand, within SM_b21487at 1408.834 kb on + strand, within SM_b21487at 1408.835 kb on - strand, within SM_b21487at 1408.837 kb on - strand, within SM_b21487at 1408.861 kb on + strand, within SM_b21487at 1408.861 kb on + strand, within SM_b21487at 1408.862 kb on - strand, within SM_b21487at 1408.862 kb on - strand, within SM_b21487at 1408.862 kb on - strand, within SM_b21487at 1408.862 kb on - strand, within SM_b21487at 1408.939 kb on + strand, within SM_b21487at 1408.940 kb on - strand, within SM_b21487at 1408.940 kb on - strand, within SM_b21487at 1409.056 kb on + strand, within SM_b21487at 1409.126 kb on - strand, within SM_b21487at 1409.144 kb on + strand, within SM_b21487at 1409.144 kb on + strand, within SM_b21487at 1409.144 kb on + strand, within SM_b21487at 1409.144 kb on + strand, within SM_b21487at 1409.246 kb on - strand, within SM_b21487at 1409.246 kb on - strand, within SM_b21487at 1409.367 kb on + strandat 1409.534 kb on - strandat 1409.627 kb on + strandat 1409.628 kb on - strandat 1409.628 kb on - strandat 1409.630 kb on + strandat 1409.631 kb on - strandat 1409.699 kb on + strand, within SM_b21488at 1409.700 kb on - strand, within SM_b21488at 1409.700 kb on - strand, within SM_b21488at 1409.700 kb on - strand, within SM_b21488at 1409.796 kb on - strand, within SM_b21488at 1410.035 kb on + strand, within SM_b21488at 1410.060 kb on - strand, within SM_b21488at 1410.084 kb on - strand, within SM_b21488at 1410.086 kb on + strand, within SM_b21488at 1410.087 kb on - strand, within SM_b21488at 1410.290 kb on + strand, within SM_b21488at 1410.341 kb on + strand, within SM_b21488at 1410.342 kb on - strand, within SM_b21488at 1410.342 kb on - strand, within SM_b21488at 1410.342 kb on - strand, within SM_b21488at 1410.342 kb on - strandat 1410.342 kb on - strand, within SM_b21488at 1410.342 kb on - strand, within SM_b21488at 1410.380 kb on + strand, within SM_b21488at 1410.380 kb on + strand, within SM_b21488at 1410.380 kb on + strand, within SM_b21488at 1410.380 kb on + strand, within SM_b21488at 1410.380 kb on + strand, within SM_b21488at 1410.381 kb on - strand, within SM_b21488at 1410.381 kb on - strand, within SM_b21488at 1410.381 kb on - strand, within SM_b21488at 1410.470 kb on + strand, within SM_b21488at 1410.470 kb on + strand, within SM_b21488at 1410.470 kb on + strand, within SM_b21488at 1410.471 kb on - strand, within SM_b21488at 1410.471 kb on - strand, within SM_b21488at 1410.629 kb on + strand, within SM_b21488at 1410.630 kb on - strand, within SM_b21488at 1410.658 kb on + strand, within SM_b21488at 1410.658 kb on + strand, within SM_b21488at 1410.658 kb on + strand, within SM_b21488at 1410.911 kb on + strand, within SM_b21488at 1410.911 kb on + strand, within SM_b21488at 1411.166 kb on + strand, within SM_b21488at 1411.216 kb on + strand, within SM_b21488at 1411.256 kb on - strand, within SM_b21488at 1411.256 kb on - strand, within SM_b21488at 1411.256 kb on - strand, within SM_b21488at 1411.341 kb on - strandat 1411.410 kb on - strandat 1411.550 kb on - strandat 1411.603 kb on + strand, within SM_b21489at 1411.603 kb on + strand, within SM_b21489at 1411.604 kb on - strand, within SM_b21489at 1411.669 kb on + strand, within SM_b21489at 1411.787 kb on - strand, within SM_b21489at 1412.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,408,516 + SM_b21487 0.19 -0.1
1,408,517 - SM_b21487 0.19 +1.3
1,408,517 - SM_b21487 0.19 +0.4
1,408,517 - SM_b21487 0.19 +0.6
1,408,834 + SM_b21487 0.47 +0.0
1,408,834 + SM_b21487 0.47 +0.9
1,408,835 - SM_b21487 0.47 -0.3
1,408,837 - SM_b21487 0.47 -0.4
1,408,861 + SM_b21487 0.49 -1.1
1,408,861 + SM_b21487 0.49 +0.2
1,408,862 - SM_b21487 0.49 +0.5
1,408,862 - SM_b21487 0.49 +0.7
1,408,862 - SM_b21487 0.49 +0.7
1,408,862 - SM_b21487 0.49 +0.8
1,408,939 + SM_b21487 0.56 +0.6
1,408,940 - SM_b21487 0.56 +0.6
1,408,940 - SM_b21487 0.56 +0.9
1,409,056 + SM_b21487 0.66 +0.5
1,409,126 - SM_b21487 0.72 +0.3
1,409,144 + SM_b21487 0.73 -0.2
1,409,144 + SM_b21487 0.73 -0.3
1,409,144 + SM_b21487 0.73 +0.2
1,409,144 + SM_b21487 0.73 +0.1
1,409,246 - SM_b21487 0.82 +0.7
1,409,246 - SM_b21487 0.82 -0.0
1,409,367 + -0.5
1,409,534 - +0.8
1,409,627 + -0.6
1,409,628 - +1.4
1,409,628 - +0.4
1,409,630 + +0.9
1,409,631 - +0.9
1,409,699 + SM_b21488 0.10 -1.9
1,409,700 - SM_b21488 0.10 +0.9
1,409,700 - SM_b21488 0.10 -0.3
1,409,700 - SM_b21488 0.10 +0.0
1,409,796 - SM_b21488 0.15 +0.5
1,410,035 + SM_b21488 0.27 -0.0
1,410,060 - SM_b21488 0.28 +0.5
1,410,084 - SM_b21488 0.30 +0.6
1,410,086 + SM_b21488 0.30 +0.8
1,410,087 - SM_b21488 0.30 +1.2
1,410,290 + SM_b21488 0.40 +0.0
1,410,341 + SM_b21488 0.42 +0.6
1,410,342 - SM_b21488 0.42 +0.6
1,410,342 - SM_b21488 0.42 +0.2
1,410,342 - SM_b21488 0.42 -0.1
1,410,342 - -0.2
1,410,342 - SM_b21488 0.42 -1.0
1,410,342 - SM_b21488 0.42 +0.5
1,410,380 + SM_b21488 0.44 -0.3
1,410,380 + SM_b21488 0.44 +0.2
1,410,380 + SM_b21488 0.44 -0.8
1,410,380 + SM_b21488 0.44 -0.7
1,410,380 + SM_b21488 0.44 -0.1
1,410,381 - SM_b21488 0.44 +0.3
1,410,381 - SM_b21488 0.44 +0.4
1,410,381 - SM_b21488 0.44 +0.2
1,410,470 + SM_b21488 0.49 +0.7
1,410,470 + SM_b21488 0.49 -0.4
1,410,470 + SM_b21488 0.49 +0.5
1,410,471 - SM_b21488 0.49 +0.3
1,410,471 - SM_b21488 0.49 +0.9
1,410,629 + SM_b21488 0.57 -1.0
1,410,630 - SM_b21488 0.57 +0.0
1,410,658 + SM_b21488 0.58 +0.3
1,410,658 + SM_b21488 0.58 +0.2
1,410,658 + SM_b21488 0.58 +0.6
1,410,911 + SM_b21488 0.71 +0.5
1,410,911 + SM_b21488 0.71 +0.8
1,411,166 + SM_b21488 0.83 +0.5
1,411,216 + SM_b21488 0.86 +0.8
1,411,256 - SM_b21488 0.88 -0.3
1,411,256 - SM_b21488 0.88 +1.0
1,411,256 - SM_b21488 0.88 +1.7
1,411,341 - -0.3
1,411,410 - -0.0
1,411,550 - +1.2
1,411,603 + SM_b21489 0.17 -0.5
1,411,603 + SM_b21489 0.17 +0.1
1,411,604 - SM_b21489 0.17 +1.1
1,411,669 + SM_b21489 0.27 +0.3
1,411,787 - SM_b21489 0.46 -1.2
1,412,105 - -0.2

Or see this region's nucleotide sequence