Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21487 and SM_b21488 are separated by 37 nucleotides SM_b21488 and SM_b21489 overlap by 4 nucleotides SM_b21489 and SM_b22024 overlap by 4 nucleotides
SM_b21487: SM_b21487 - cytochrome o ubiquinol oxidase subunit II, at 1,408,291 to 1,409,451
_b21487
SM_b21488: SM_b21488 - cytochrome o ubiquinol oxidase subunit I, at 1,409,489 to 1,411,498
_b21488
SM_b21489: SM_b21489 - cytochrome O ubiquinol oxidase subunit III, at 1,411,495 to 1,412,127
_b21489
SM_b22024: SM_b22024 - cytochrome O ubiquinol oxidase CyoD, at 1,412,124 to 1,412,525
_b22024
Position (kb)
1409
1410
1411
1412 Strain fitness (log2 ratio)
-2
-1
0
1 at 1408.516 kb on + strand, within SM_b21487 at 1408.517 kb on - strand, within SM_b21487 at 1408.517 kb on - strand, within SM_b21487 at 1408.517 kb on - strand, within SM_b21487 at 1408.834 kb on + strand, within SM_b21487 at 1408.834 kb on + strand, within SM_b21487 at 1408.835 kb on - strand, within SM_b21487 at 1408.837 kb on - strand, within SM_b21487 at 1408.861 kb on + strand, within SM_b21487 at 1408.861 kb on + strand, within SM_b21487 at 1408.862 kb on - strand, within SM_b21487 at 1408.862 kb on - strand, within SM_b21487 at 1408.862 kb on - strand, within SM_b21487 at 1408.862 kb on - strand, within SM_b21487 at 1408.939 kb on + strand, within SM_b21487 at 1408.940 kb on - strand, within SM_b21487 at 1408.940 kb on - strand, within SM_b21487 at 1409.056 kb on + strand, within SM_b21487 at 1409.126 kb on - strand, within SM_b21487 at 1409.144 kb on + strand, within SM_b21487 at 1409.144 kb on + strand, within SM_b21487 at 1409.144 kb on + strand, within SM_b21487 at 1409.144 kb on + strand, within SM_b21487 at 1409.246 kb on - strand, within SM_b21487 at 1409.246 kb on - strand, within SM_b21487 at 1409.367 kb on + strand at 1409.534 kb on - strand at 1409.627 kb on + strand at 1409.628 kb on - strand at 1409.628 kb on - strand at 1409.630 kb on + strand at 1409.631 kb on - strand at 1409.699 kb on + strand, within SM_b21488 at 1409.700 kb on - strand, within SM_b21488 at 1409.700 kb on - strand, within SM_b21488 at 1409.700 kb on - strand, within SM_b21488 at 1409.796 kb on - strand, within SM_b21488 at 1410.035 kb on + strand, within SM_b21488 at 1410.060 kb on - strand, within SM_b21488 at 1410.084 kb on - strand, within SM_b21488 at 1410.086 kb on + strand, within SM_b21488 at 1410.087 kb on - strand, within SM_b21488 at 1410.290 kb on + strand, within SM_b21488 at 1410.341 kb on + strand, within SM_b21488 at 1410.342 kb on - strand, within SM_b21488 at 1410.342 kb on - strand, within SM_b21488 at 1410.342 kb on - strand, within SM_b21488 at 1410.342 kb on - strand at 1410.342 kb on - strand, within SM_b21488 at 1410.342 kb on - strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.381 kb on - strand, within SM_b21488 at 1410.381 kb on - strand, within SM_b21488 at 1410.381 kb on - strand, within SM_b21488 at 1410.470 kb on + strand, within SM_b21488 at 1410.470 kb on + strand, within SM_b21488 at 1410.470 kb on + strand, within SM_b21488 at 1410.471 kb on - strand, within SM_b21488 at 1410.471 kb on - strand, within SM_b21488 at 1410.629 kb on + strand, within SM_b21488 at 1410.630 kb on - strand, within SM_b21488 at 1410.658 kb on + strand, within SM_b21488 at 1410.658 kb on + strand, within SM_b21488 at 1410.658 kb on + strand, within SM_b21488 at 1410.911 kb on + strand, within SM_b21488 at 1410.911 kb on + strand, within SM_b21488 at 1411.166 kb on + strand, within SM_b21488 at 1411.216 kb on + strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.341 kb on - strand at 1411.410 kb on - strand at 1411.550 kb on - strand at 1411.603 kb on + strand, within SM_b21489 at 1411.603 kb on + strand, within SM_b21489 at 1411.604 kb on - strand, within SM_b21489 at 1411.669 kb on + strand, within SM_b21489 at 1411.787 kb on - strand, within SM_b21489 at 1412.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,408,516 + SM_b21487 0.19 -0.1 1,408,517 - SM_b21487 0.19 +1.3 1,408,517 - SM_b21487 0.19 +0.4 1,408,517 - SM_b21487 0.19 +0.6 1,408,834 + SM_b21487 0.47 +0.0 1,408,834 + SM_b21487 0.47 +0.9 1,408,835 - SM_b21487 0.47 -0.3 1,408,837 - SM_b21487 0.47 -0.4 1,408,861 + SM_b21487 0.49 -1.1 1,408,861 + SM_b21487 0.49 +0.2 1,408,862 - SM_b21487 0.49 +0.5 1,408,862 - SM_b21487 0.49 +0.7 1,408,862 - SM_b21487 0.49 +0.7 1,408,862 - SM_b21487 0.49 +0.8 1,408,939 + SM_b21487 0.56 +0.6 1,408,940 - SM_b21487 0.56 +0.6 1,408,940 - SM_b21487 0.56 +0.9 1,409,056 + SM_b21487 0.66 +0.5 1,409,126 - SM_b21487 0.72 +0.3 1,409,144 + SM_b21487 0.73 -0.2 1,409,144 + SM_b21487 0.73 -0.3 1,409,144 + SM_b21487 0.73 +0.2 1,409,144 + SM_b21487 0.73 +0.1 1,409,246 - SM_b21487 0.82 +0.7 1,409,246 - SM_b21487 0.82 -0.0 1,409,367 + -0.5 1,409,534 - +0.8 1,409,627 + -0.6 1,409,628 - +1.4 1,409,628 - +0.4 1,409,630 + +0.9 1,409,631 - +0.9 1,409,699 + SM_b21488 0.10 -1.9 1,409,700 - SM_b21488 0.10 +0.9 1,409,700 - SM_b21488 0.10 -0.3 1,409,700 - SM_b21488 0.10 +0.0 1,409,796 - SM_b21488 0.15 +0.5 1,410,035 + SM_b21488 0.27 -0.0 1,410,060 - SM_b21488 0.28 +0.5 1,410,084 - SM_b21488 0.30 +0.6 1,410,086 + SM_b21488 0.30 +0.8 1,410,087 - SM_b21488 0.30 +1.2 1,410,290 + SM_b21488 0.40 +0.0 1,410,341 + SM_b21488 0.42 +0.6 1,410,342 - SM_b21488 0.42 +0.6 1,410,342 - SM_b21488 0.42 +0.2 1,410,342 - SM_b21488 0.42 -0.1 1,410,342 - -0.2 1,410,342 - SM_b21488 0.42 -1.0 1,410,342 - SM_b21488 0.42 +0.5 1,410,380 + SM_b21488 0.44 -0.3 1,410,380 + SM_b21488 0.44 +0.2 1,410,380 + SM_b21488 0.44 -0.8 1,410,380 + SM_b21488 0.44 -0.7 1,410,380 + SM_b21488 0.44 -0.1 1,410,381 - SM_b21488 0.44 +0.3 1,410,381 - SM_b21488 0.44 +0.4 1,410,381 - SM_b21488 0.44 +0.2 1,410,470 + SM_b21488 0.49 +0.7 1,410,470 + SM_b21488 0.49 -0.4 1,410,470 + SM_b21488 0.49 +0.5 1,410,471 - SM_b21488 0.49 +0.3 1,410,471 - SM_b21488 0.49 +0.9 1,410,629 + SM_b21488 0.57 -1.0 1,410,630 - SM_b21488 0.57 +0.0 1,410,658 + SM_b21488 0.58 +0.3 1,410,658 + SM_b21488 0.58 +0.2 1,410,658 + SM_b21488 0.58 +0.6 1,410,911 + SM_b21488 0.71 +0.5 1,410,911 + SM_b21488 0.71 +0.8 1,411,166 + SM_b21488 0.83 +0.5 1,411,216 + SM_b21488 0.86 +0.8 1,411,256 - SM_b21488 0.88 -0.3 1,411,256 - SM_b21488 0.88 +1.0 1,411,256 - SM_b21488 0.88 +1.7 1,411,341 - -0.3 1,411,410 - -0.0 1,411,550 - +1.2 1,411,603 + SM_b21489 0.17 -0.5 1,411,603 + SM_b21489 0.17 +0.1 1,411,604 - SM_b21489 0.17 +1.1 1,411,669 + SM_b21489 0.27 +0.3 1,411,787 - SM_b21489 0.46 -1.2 1,412,105 - -0.2
Or see this region's nucleotide sequence