Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21473

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21470 and SM_b21471 overlap by 23 nucleotidesSM_b21471 and SM_b21472 are separated by 43 nucleotidesSM_b21472 and SM_b21473 are separated by 40 nucleotidesSM_b21473 and SM_b21474 overlap by 4 nucleotides SM_b21470: SM_b21470 - hypothetical protein, at 1,397,735 to 1,398,016 _b21470 SM_b21471: SM_b21471 - hypothetical protein, at 1,397,994 to 1,398,242 _b21471 SM_b21472: SM_b21472 - hypothetical protein, at 1,398,286 to 1,398,825 _b21472 SM_b21473: SM_b21473 - hypothetical protein, at 1,398,866 to 1,399,300 _b21473 SM_b21474: SM_b21474 - 3-ketoacyl-ACP reductase, at 1,399,297 to 1,400,079 _b21474 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1397.877 kb on + strand, within SM_b21470at 1398.180 kb on + strand, within SM_b21471at 1398.180 kb on + strand, within SM_b21471at 1398.181 kb on - strand, within SM_b21471at 1398.181 kb on - strand, within SM_b21471at 1398.231 kb on - strandat 1398.231 kb on - strandat 1398.308 kb on + strandat 1398.309 kb on - strandat 1398.438 kb on + strand, within SM_b21472at 1398.452 kb on - strand, within SM_b21472at 1398.488 kb on + strand, within SM_b21472at 1398.489 kb on - strand, within SM_b21472at 1398.489 kb on - strand, within SM_b21472at 1398.495 kb on - strandat 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.682 kb on + strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.683 kb on - strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.686 kb on + strand, within SM_b21472at 1398.687 kb on - strand, within SM_b21472at 1398.768 kb on + strand, within SM_b21472at 1398.769 kb on - strandat 1398.928 kb on + strand, within SM_b21473at 1398.928 kb on + strand, within SM_b21473at 1398.944 kb on - strand, within SM_b21473at 1399.246 kb on - strand, within SM_b21473at 1399.445 kb on + strand, within SM_b21474at 1399.445 kb on + strand, within SM_b21474at 1399.445 kb on + strand, within SM_b21474at 1399.445 kb on + strand, within SM_b21474at 1399.446 kb on - strand, within SM_b21474at 1399.446 kb on - strand, within SM_b21474at 1399.446 kb on - strand, within SM_b21474at 1399.446 kb on - strand, within SM_b21474at 1399.530 kb on + strand, within SM_b21474at 1399.544 kb on + strand, within SM_b21474at 1399.544 kb on + strand, within SM_b21474at 1399.545 kb on - strand, within SM_b21474at 1399.765 kb on + strand, within SM_b21474at 1399.824 kb on + strand, within SM_b21474at 1399.950 kb on + strand, within SM_b21474at 1399.951 kb on - strand, within SM_b21474at 1399.951 kb on - strand, within SM_b21474at 1400.120 kb on + strandat 1400.120 kb on + strandat 1400.165 kb on - strandat 1400.165 kb on - strandat 1400.166 kb on + strandat 1400.167 kb on - strandat 1400.167 kb on - strandat 1400.167 kb on - strandat 1400.171 kb on + strandat 1400.171 kb on + strandat 1400.171 kb on + strandat 1400.210 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,397,877 + SM_b21470 0.50 +0.1
1,398,180 + SM_b21471 0.75 -0.6
1,398,180 + SM_b21471 0.75 -0.0
1,398,181 - SM_b21471 0.75 -0.0
1,398,181 - SM_b21471 0.75 -0.4
1,398,231 - -5.5
1,398,231 - -0.5
1,398,308 + -0.2
1,398,309 - +0.5
1,398,438 + SM_b21472 0.28 -0.8
1,398,452 - SM_b21472 0.31 -1.2
1,398,488 + SM_b21472 0.37 +0.1
1,398,489 - SM_b21472 0.38 +0.1
1,398,489 - SM_b21472 0.38 +0.9
1,398,495 - +1.9
1,398,682 + SM_b21472 0.73 +0.3
1,398,682 + SM_b21472 0.73 +0.7
1,398,682 + SM_b21472 0.73 +0.5
1,398,682 + SM_b21472 0.73 -0.1
1,398,682 + SM_b21472 0.73 +0.1
1,398,683 - SM_b21472 0.74 +0.3
1,398,683 - SM_b21472 0.74 -0.3
1,398,683 - SM_b21472 0.74 -0.1
1,398,683 - SM_b21472 0.74 +0.7
1,398,683 - SM_b21472 0.74 -1.9
1,398,686 + SM_b21472 0.74 -0.2
1,398,686 + SM_b21472 0.74 -0.1
1,398,686 + SM_b21472 0.74 -0.1
1,398,687 - SM_b21472 0.74 +0.0
1,398,768 + SM_b21472 0.89 +0.1
1,398,769 - -1.1
1,398,928 + SM_b21473 0.14 +0.2
1,398,928 + SM_b21473 0.14 +0.3
1,398,944 - SM_b21473 0.18 +0.2
1,399,246 - SM_b21473 0.87 +0.4
1,399,445 + SM_b21474 0.19 -0.2
1,399,445 + SM_b21474 0.19 +0.2
1,399,445 + SM_b21474 0.19 -0.1
1,399,445 + SM_b21474 0.19 +0.1
1,399,446 - SM_b21474 0.19 +0.7
1,399,446 - SM_b21474 0.19 +0.1
1,399,446 - SM_b21474 0.19 -0.6
1,399,446 - SM_b21474 0.19 -0.2
1,399,530 + SM_b21474 0.30 -0.3
1,399,544 + SM_b21474 0.32 +0.3
1,399,544 + SM_b21474 0.32 +1.9
1,399,545 - SM_b21474 0.32 +0.6
1,399,765 + SM_b21474 0.60 -0.8
1,399,824 + SM_b21474 0.67 -0.2
1,399,950 + SM_b21474 0.83 -0.1
1,399,951 - SM_b21474 0.84 -0.2
1,399,951 - SM_b21474 0.84 -1.3
1,400,120 + -0.5
1,400,120 + +0.3
1,400,165 - +0.4
1,400,165 - +0.9
1,400,166 + -0.6
1,400,167 - +0.5
1,400,167 - -0.1
1,400,167 - +1.9
1,400,171 + -0.0
1,400,171 + +0.4
1,400,171 + +1.6
1,400,210 + -0.0

Or see this region's nucleotide sequence