Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21048 and SM_b21049 are separated by 45 nucleotides SM_b21049 and SM_b21050 are separated by 212 nucleotides
SM_b21048: SM_b21048 - hypothetical protein, at 680,362 to 681,807
_b21048
SM_b21049: SM_b21049 - hypothetical protein, at 681,853 to 682,011
_b21049
SM_b21050: SM_b21050 - PST type surface saccharide translocase, ExoT protein, at 682,224 to 683,777
_b21050
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1 at 680.864 kb on + strand, within SM_b21048 at 680.864 kb on + strand, within SM_b21048 at 680.865 kb on - strand, within SM_b21048 at 681.005 kb on + strand, within SM_b21048 at 681.093 kb on - strand, within SM_b21048 at 681.093 kb on - strand, within SM_b21048 at 681.098 kb on + strand, within SM_b21048 at 681.206 kb on + strand, within SM_b21048 at 681.207 kb on - strand, within SM_b21048 at 681.294 kb on + strand, within SM_b21048 at 681.294 kb on + strand, within SM_b21048 at 681.294 kb on + strand, within SM_b21048 at 681.321 kb on + strand, within SM_b21048 at 681.349 kb on + strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.359 kb on - strand, within SM_b21048 at 681.392 kb on + strand, within SM_b21048 at 681.472 kb on + strand, within SM_b21048 at 681.472 kb on + strand, within SM_b21048 at 681.473 kb on - strand, within SM_b21048 at 681.527 kb on + strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.528 kb on - strand, within SM_b21048 at 681.647 kb on + strand, within SM_b21048 at 681.647 kb on + strand, within SM_b21048 at 681.648 kb on - strand, within SM_b21048 at 681.648 kb on - strand, within SM_b21048 at 681.749 kb on + strand at 681.750 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.753 kb on - strand at 681.758 kb on - strand at 681.758 kb on - strand at 681.758 kb on - strand at 681.761 kb on - strand at 681.782 kb on - strand at 681.855 kb on - strand at 681.920 kb on + strand, within SM_b21049 at 681.921 kb on - strand, within SM_b21049 at 681.921 kb on - strand, within SM_b21049 at 681.942 kb on - strand, within SM_b21049 at 682.037 kb on - strand at 682.037 kb on - strand at 682.083 kb on - strand at 682.128 kb on + strand at 682.128 kb on + strand at 682.129 kb on - strand at 682.209 kb on + strand at 682.209 kb on + strand at 682.231 kb on + strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.232 kb on - strand at 682.252 kb on + strand at 682.265 kb on - strand at 682.292 kb on - strand at 682.441 kb on + strand, within SM_b21050 at 682.441 kb on + strand, within SM_b21050 at 682.442 kb on - strand, within SM_b21050 at 682.442 kb on - strand, within SM_b21050 at 682.495 kb on + strand, within SM_b21050 at 682.496 kb on - strand, within SM_b21050 at 682.496 kb on - strand, within SM_b21050 at 682.693 kb on + strand, within SM_b21050 at 682.694 kb on - strand, within SM_b21050 at 682.880 kb on - strand, within SM_b21050 at 682.923 kb on - strand, within SM_b21050 at 682.929 kb on + strand, within SM_b21050 at 682.990 kb on + strand, within SM_b21050
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 680,864 + SM_b21048 0.35 +0.1 680,864 + SM_b21048 0.35 -0.3 680,865 - SM_b21048 0.35 +0.5 681,005 + SM_b21048 0.44 -0.8 681,093 - SM_b21048 0.51 -0.3 681,093 - SM_b21048 0.51 +0.4 681,098 + SM_b21048 0.51 +0.6 681,206 + SM_b21048 0.58 -0.8 681,207 - SM_b21048 0.58 -0.2 681,294 + SM_b21048 0.64 +0.5 681,294 + SM_b21048 0.64 -0.3 681,294 + SM_b21048 0.64 -0.0 681,321 + SM_b21048 0.66 +0.1 681,349 + SM_b21048 0.68 +0.5 681,359 - SM_b21048 0.69 -0.2 681,359 - SM_b21048 0.69 +0.1 681,359 - SM_b21048 0.69 -0.2 681,392 + SM_b21048 0.71 -0.1 681,472 + SM_b21048 0.77 -0.3 681,472 + SM_b21048 0.77 -0.8 681,473 - SM_b21048 0.77 -0.6 681,527 + SM_b21048 0.81 -0.8 681,528 - SM_b21048 0.81 +0.4 681,528 - SM_b21048 0.81 -0.4 681,528 - SM_b21048 0.81 -0.8 681,647 + SM_b21048 0.89 +0.3 681,647 + SM_b21048 0.89 -0.8 681,648 - SM_b21048 0.89 -1.0 681,648 - SM_b21048 0.89 -0.1 681,749 + +0.3 681,750 - +0.9 681,753 - +0.4 681,753 - +0.7 681,753 - +0.5 681,753 - -0.1 681,753 - -0.7 681,758 - +0.1 681,758 - -0.1 681,758 - -0.1 681,761 - -0.5 681,782 - -0.1 681,855 - +0.0 681,920 + SM_b21049 0.42 +1.0 681,921 - SM_b21049 0.43 +0.9 681,921 - SM_b21049 0.43 +1.1 681,942 - SM_b21049 0.56 +0.5 682,037 - +0.3 682,037 - +0.5 682,083 - -0.0 682,128 + -0.3 682,128 + -0.7 682,129 - +0.7 682,209 + -0.4 682,209 + +0.1 682,231 + +0.3 682,232 - -0.5 682,232 - +0.6 682,232 - -0.1 682,232 - -0.6 682,252 + +0.1 682,265 - -0.2 682,292 - -0.1 682,441 + SM_b21050 0.14 -0.3 682,441 + SM_b21050 0.14 -0.5 682,442 - SM_b21050 0.14 +0.2 682,442 - SM_b21050 0.14 -0.0 682,495 + SM_b21050 0.17 -0.3 682,496 - SM_b21050 0.18 -0.5 682,496 - SM_b21050 0.18 +0.2 682,693 + SM_b21050 0.30 +0.4 682,694 - SM_b21050 0.30 +0.0 682,880 - SM_b21050 0.42 -0.6 682,923 - SM_b21050 0.45 +0.2 682,929 + SM_b21050 0.45 -0.8 682,990 + SM_b21050 0.49 -0.0
Or see this region's nucleotide sequence