Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20812

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20810 and SM_b20811 are separated by 145 nucleotidesSM_b20811 and SM_b20812 are separated by 65 nucleotidesSM_b20812 and SM_b20813 are separated by 630 nucleotides SM_b20810: SM_b20810 - membrane-located cell surface saccharide acetylase, at 595,610 to 597,643 _b20810 SM_b20811: SM_b20811 - hypothetical protein, at 597,789 to 598,109 _b20811 SM_b20812: SM_b20812 - hypothetical protein, at 598,175 to 599,221 _b20812 SM_b20813: SM_b20813 - lipid ABC transporter permease/ATP-binding protein, at 599,852 to 601,657 _b20813 Position (kb) 598 599 600Strain fitness (log2 ratio) -2 -1 0 1 2 3at 597.187 kb on + strand, within SM_b20810at 597.188 kb on - strand, within SM_b20810at 597.210 kb on + strand, within SM_b20810at 597.233 kb on - strand, within SM_b20810at 597.233 kb on - strand, within SM_b20810at 597.273 kb on + strand, within SM_b20810at 597.273 kb on + strand, within SM_b20810at 597.274 kb on - strand, within SM_b20810at 597.305 kb on - strand, within SM_b20810at 597.326 kb on + strand, within SM_b20810at 597.326 kb on + strand, within SM_b20810at 597.327 kb on - strand, within SM_b20810at 597.381 kb on + strand, within SM_b20810at 597.381 kb on + strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.399 kb on - strand, within SM_b20810at 597.514 kb on + strandat 597.514 kb on + strandat 597.514 kb on + strandat 597.514 kb on + strandat 597.515 kb on - strandat 597.515 kb on - strandat 597.515 kb on - strandat 597.536 kb on + strandat 597.536 kb on + strandat 597.537 kb on - strandat 597.537 kb on - strandat 597.609 kb on + strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.706 kb on - strandat 597.736 kb on + strandat 597.775 kb on - strandat 597.922 kb on + strand, within SM_b20811at 597.941 kb on + strand, within SM_b20811at 597.941 kb on + strand, within SM_b20811at 598.078 kb on + strandat 598.107 kb on + strandat 598.176 kb on + strandat 598.177 kb on - strandat 598.178 kb on + strandat 598.179 kb on - strandat 598.195 kb on + strandat 598.257 kb on - strandat 598.332 kb on + strand, within SM_b20812at 598.333 kb on - strand, within SM_b20812at 598.390 kb on + strand, within SM_b20812at 598.414 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.525 kb on - strand, within SM_b20812at 598.552 kb on + strand, within SM_b20812at 598.815 kb on + strand, within SM_b20812at 598.816 kb on - strand, within SM_b20812at 598.819 kb on + strand, within SM_b20812at 598.819 kb on + strand, within SM_b20812at 598.819 kb on + strand, within SM_b20812at 598.820 kb on - strand, within SM_b20812at 598.823 kb on + strand, within SM_b20812at 598.823 kb on + strand, within SM_b20812at 598.823 kb on + strand, within SM_b20812at 598.824 kb on - strand, within SM_b20812at 598.838 kb on + strand, within SM_b20812at 598.856 kb on + strand, within SM_b20812at 598.857 kb on - strand, within SM_b20812at 598.857 kb on - strand, within SM_b20812at 598.915 kb on + strand, within SM_b20812at 598.915 kb on + strand, within SM_b20812at 598.915 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.965 kb on - strand, within SM_b20812at 598.965 kb on - strand, within SM_b20812at 598.965 kb on - strand, within SM_b20812at 598.965 kb on - strand, within SM_b20812at 598.966 kb on + strand, within SM_b20812at 598.966 kb on + strand, within SM_b20812at 598.966 kb on + strand, within SM_b20812at 598.967 kb on - strand, within SM_b20812at 598.990 kb on - strand, within SM_b20812at 599.120 kb on + strandat 599.120 kb on + strandat 599.268 kb on + strandat 599.269 kb on - strandat 599.303 kb on + strandat 599.303 kb on + strandat 599.303 kb on + strandat 599.303 kb on + strandat 599.303 kb on + strandat 599.304 kb on - strandat 599.304 kb on - strandat 599.304 kb on - strandat 599.305 kb on + strandat 599.305 kb on + strandat 599.305 kb on + strandat 599.306 kb on - strandat 599.306 kb on - strandat 599.306 kb on - strandat 599.306 kb on - strandat 599.306 kb on - strandat 599.404 kb on + strandat 599.405 kb on - strandat 599.405 kb on - strandat 599.477 kb on + strandat 599.489 kb on + strandat 599.545 kb on + strandat 599.545 kb on + strandat 599.546 kb on - strandat 599.546 kb on - strandat 599.719 kb on - strandat 599.719 kb on - strandat 599.719 kb on - strandat 599.788 kb on + strandat 599.788 kb on + strandat 599.790 kb on + strandat 599.790 kb on + strandat 599.791 kb on - strandat 599.791 kb on - strandat 599.791 kb on - strandat 599.791 kb on - strandat 599.791 kb on - strandat 599.850 kb on - strandat 599.850 kb on - strandat 599.887 kb on + strandat 599.910 kb on + strandat 600.087 kb on + strand, within SM_b20813at 600.122 kb on + strand, within SM_b20813at 600.122 kb on + strand, within SM_b20813at 600.123 kb on - strand, within SM_b20813at 600.123 kb on - strand, within SM_b20813at 600.160 kb on + strand, within SM_b20813at 600.160 kb on + strand, within SM_b20813at 600.173 kb on + strand, within SM_b20813at 600.174 kb on - strand, within SM_b20813at 600.174 kb on - strand, within SM_b20813at 600.175 kb on + strand, within SM_b20813at 600.175 kb on + strand, within SM_b20813at 600.175 kb on + strand, within SM_b20813at 600.175 kb on + strand, within SM_b20813at 600.175 kb on + strand, within SM_b20813at 600.189 kb on - strand, within SM_b20813

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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597,187 + SM_b20810 0.78 -0.6
597,188 - SM_b20810 0.78 -0.2
597,210 + SM_b20810 0.79 -0.2
597,233 - SM_b20810 0.80 -0.2
597,233 - SM_b20810 0.80 -0.7
597,273 + SM_b20810 0.82 -0.2
597,273 + SM_b20810 0.82 -0.4
597,274 - SM_b20810 0.82 +0.0
597,305 - SM_b20810 0.83 -0.8
597,326 + SM_b20810 0.84 -0.1
597,326 + SM_b20810 0.84 -0.4
597,327 - SM_b20810 0.84 +3.1
597,381 + SM_b20810 0.87 -0.2
597,381 + SM_b20810 0.87 -0.4
597,382 - SM_b20810 0.87 -0.6
597,382 - SM_b20810 0.87 -0.3
597,382 - SM_b20810 0.87 -0.5
597,399 - SM_b20810 0.88 -0.3
597,514 + -0.6
597,514 + +0.1
597,514 + -0.1
597,514 + -0.3
597,515 - +0.7
597,515 - -1.3
597,515 - -0.2
597,536 + -0.3
597,536 + +0.0
597,537 - -1.1
597,537 - +0.1
597,609 + -0.1
597,610 - +0.1
597,610 - -0.3
597,610 - -0.1
597,610 - +0.4
597,706 - -0.2
597,736 + -0.4
597,775 - +0.3
597,922 + SM_b20811 0.41 -0.8
597,941 + SM_b20811 0.47 -0.2
597,941 + SM_b20811 0.47 +0.0
598,078 + +0.6
598,107 + +0.3
598,176 + -0.1
598,177 - +0.6
598,178 + -0.4
598,179 - -0.6
598,195 + +0.3
598,257 - +0.3
598,332 + SM_b20812 0.15 +0.6
598,333 - SM_b20812 0.15 +0.5
598,390 + SM_b20812 0.21 +0.6
598,414 + SM_b20812 0.23 +0.3
598,524 + SM_b20812 0.33 +0.7
598,524 + SM_b20812 0.33 -0.3
598,524 + SM_b20812 0.33 +0.4
598,525 - SM_b20812 0.33 -1.4
598,552 + SM_b20812 0.36 -0.3
598,815 + SM_b20812 0.61 +0.5
598,816 - SM_b20812 0.61 +0.2
598,819 + SM_b20812 0.62 +1.6
598,819 + SM_b20812 0.62 +0.6
598,819 + SM_b20812 0.62 +0.1
598,820 - SM_b20812 0.62 -0.1
598,823 + SM_b20812 0.62 -0.4
598,823 + SM_b20812 0.62 +0.4
598,823 + SM_b20812 0.62 +0.9
598,824 - SM_b20812 0.62 -0.0
598,838 + SM_b20812 0.63 -2.2
598,856 + SM_b20812 0.65 -0.5
598,857 - SM_b20812 0.65 +0.2
598,857 - SM_b20812 0.65 +0.5
598,915 + SM_b20812 0.71 -0.1
598,915 + SM_b20812 0.71 +0.6
598,915 + SM_b20812 0.71 +0.4
598,964 + SM_b20812 0.75 +1.3
598,964 + SM_b20812 0.75 +0.4
598,964 + SM_b20812 0.75 -1.7
598,964 + SM_b20812 0.75 +0.1
598,964 + SM_b20812 0.75 -1.3
598,964 + SM_b20812 0.75 -0.1
598,964 + SM_b20812 0.75 +0.8
598,965 - SM_b20812 0.75 +0.1
598,965 - SM_b20812 0.75 -0.1
598,965 - SM_b20812 0.75 -0.1
598,965 - SM_b20812 0.75 +0.3
598,966 + SM_b20812 0.76 -0.5
598,966 + SM_b20812 0.76 +0.4
598,966 + SM_b20812 0.76 +0.1
598,967 - SM_b20812 0.76 +0.2
598,990 - SM_b20812 0.78 +0.8
599,120 + -0.1
599,120 + +0.8
599,268 + -0.5
599,269 - -0.0
599,303 + +0.0
599,303 + -0.0
599,303 + +0.7
599,303 + +0.1
599,303 + +0.2
599,304 - +0.2
599,304 - +0.5
599,304 - +0.3
599,305 + -0.9
599,305 + +0.8
599,305 + +1.0
599,306 - -1.7
599,306 - +0.2
599,306 - +1.6
599,306 - +1.0
599,306 - -0.1
599,404 + -0.0
599,405 - -0.2
599,405 - -0.5
599,477 + +0.3
599,489 + +0.5
599,545 + -0.3
599,545 + -1.8
599,546 - +0.4
599,546 - -0.4
599,719 - -1.4
599,719 - -0.4
599,719 - -0.9
599,788 + -0.6
599,788 + -0.3
599,790 + +0.2
599,790 + -0.5
599,791 - -0.4
599,791 - -0.4
599,791 - +0.1
599,791 - +1.4
599,791 - -1.0
599,850 - +0.1
599,850 - -1.7
599,887 + -0.3
599,910 + +0.5
600,087 + SM_b20813 0.13 +0.2
600,122 + SM_b20813 0.15 +0.1
600,122 + SM_b20813 0.15 -0.1
600,123 - SM_b20813 0.15 -0.7
600,123 - SM_b20813 0.15 +0.9
600,160 + SM_b20813 0.17 +0.0
600,160 + SM_b20813 0.17 -0.0
600,173 + SM_b20813 0.18 -0.2
600,174 - SM_b20813 0.18 +0.6
600,174 - SM_b20813 0.18 -0.6
600,175 + SM_b20813 0.18 -0.6
600,175 + SM_b20813 0.18 +0.6
600,175 + SM_b20813 0.18 -0.4
600,175 + SM_b20813 0.18 +0.1
600,175 + SM_b20813 0.18 +0.2
600,189 - SM_b20813 0.19 -0.0

Or see this region's nucleotide sequence