Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20774

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20772 and SM_b20773 are separated by 197 nucleotidesSM_b20773 and SM_b20774 are separated by 64 nucleotidesSM_b20774 and SM_b20775 are separated by 130 nucleotides SM_b20772: SM_b20772 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,564,614 to 1,565,660 _b20772 SM_b20773: SM_b20773 - GntR family transcriptional regulator, at 1,565,858 to 1,566,544 _b20773 SM_b20774: SM_b20774 - hypothetical protein, at 1,566,609 to 1,567,154 _b20774 SM_b20775: SM_b20775 - TonB-dependent receptor protein, at 1,567,285 to 1,570,887 _b20775 Position (kb) 1566 1567 1568Strain fitness (log2 ratio) -1 0 1at 1566.060 kb on - strand, within SM_b20773at 1566.257 kb on + strand, within SM_b20773at 1566.285 kb on - strand, within SM_b20773at 1566.285 kb on - strand, within SM_b20773at 1566.285 kb on - strand, within SM_b20773at 1566.564 kb on - strandat 1566.591 kb on + strandat 1566.592 kb on - strandat 1566.632 kb on + strandat 1566.632 kb on + strandat 1566.632 kb on + strandat 1566.633 kb on - strandat 1566.633 kb on - strandat 1566.634 kb on + strandat 1566.635 kb on - strandat 1566.648 kb on + strandat 1567.005 kb on - strand, within SM_b20774at 1567.032 kb on + strand, within SM_b20774at 1567.078 kb on + strand, within SM_b20774at 1567.541 kb on + strandat 1567.541 kb on + strandat 1567.541 kb on + strandat 1567.542 kb on - strandat 1567.542 kb on - strandat 1567.777 kb on + strand, within SM_b20775at 1567.854 kb on + strand, within SM_b20775at 1568.026 kb on + strand, within SM_b20775at 1568.026 kb on + strand, within SM_b20775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,566,060 - SM_b20773 0.29 +0.3
1,566,257 + SM_b20773 0.58 -0.4
1,566,285 - SM_b20773 0.62 -0.3
1,566,285 - SM_b20773 0.62 -1.3
1,566,285 - SM_b20773 0.62 +0.7
1,566,564 - -1.0
1,566,591 + +1.0
1,566,592 - -0.1
1,566,632 + +1.0
1,566,632 + -0.5
1,566,632 + -0.3
1,566,633 - -0.2
1,566,633 - +0.1
1,566,634 + -0.2
1,566,635 - -0.2
1,566,648 + +0.1
1,567,005 - SM_b20774 0.73 +0.0
1,567,032 + SM_b20774 0.77 +0.5
1,567,078 + SM_b20774 0.86 +0.8
1,567,541 + -0.0
1,567,541 + -0.4
1,567,541 + -0.3
1,567,542 - -1.1
1,567,542 - -0.4
1,567,777 + SM_b20775 0.14 -0.7
1,567,854 + SM_b20775 0.16 -0.0
1,568,026 + SM_b20775 0.21 +0.3
1,568,026 + SM_b20775 0.21 -0.3

Or see this region's nucleotide sequence