Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20772 and SM_b20773 are separated by 197 nucleotides SM_b20773 and SM_b20774 are separated by 64 nucleotides SM_b20774 and SM_b20775 are separated by 130 nucleotides
SM_b20772: SM_b20772 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,564,614 to 1,565,660
_b20772
SM_b20773: SM_b20773 - GntR family transcriptional regulator, at 1,565,858 to 1,566,544
_b20773
SM_b20774: SM_b20774 - hypothetical protein, at 1,566,609 to 1,567,154
_b20774
SM_b20775: SM_b20775 - TonB-dependent receptor protein, at 1,567,285 to 1,570,887
_b20775
Position (kb)
1566
1567
1568 Strain fitness (log2 ratio)
-1
0
1 at 1566.060 kb on - strand, within SM_b20773 at 1566.257 kb on + strand, within SM_b20773 at 1566.285 kb on - strand, within SM_b20773 at 1566.285 kb on - strand, within SM_b20773 at 1566.285 kb on - strand, within SM_b20773 at 1566.564 kb on - strand at 1566.591 kb on + strand at 1566.592 kb on - strand at 1566.632 kb on + strand at 1566.632 kb on + strand at 1566.632 kb on + strand at 1566.633 kb on - strand at 1566.633 kb on - strand at 1566.634 kb on + strand at 1566.635 kb on - strand at 1566.648 kb on + strand at 1567.005 kb on - strand, within SM_b20774 at 1567.032 kb on + strand, within SM_b20774 at 1567.078 kb on + strand, within SM_b20774 at 1567.541 kb on + strand at 1567.541 kb on + strand at 1567.541 kb on + strand at 1567.542 kb on - strand at 1567.542 kb on - strand at 1567.777 kb on + strand, within SM_b20775 at 1567.854 kb on + strand, within SM_b20775 at 1568.026 kb on + strand, within SM_b20775 at 1568.026 kb on + strand, within SM_b20775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,566,060 - SM_b20773 0.29 +0.3 1,566,257 + SM_b20773 0.58 -0.4 1,566,285 - SM_b20773 0.62 -0.3 1,566,285 - SM_b20773 0.62 -1.3 1,566,285 - SM_b20773 0.62 +0.7 1,566,564 - -1.0 1,566,591 + +1.0 1,566,592 - -0.1 1,566,632 + +1.0 1,566,632 + -0.5 1,566,632 + -0.3 1,566,633 - -0.2 1,566,633 - +0.1 1,566,634 + -0.2 1,566,635 - -0.2 1,566,648 + +0.1 1,567,005 - SM_b20774 0.73 +0.0 1,567,032 + SM_b20774 0.77 +0.5 1,567,078 + SM_b20774 0.86 +0.8 1,567,541 + -0.0 1,567,541 + -0.4 1,567,541 + -0.3 1,567,542 - -1.1 1,567,542 - -0.4 1,567,777 + SM_b20775 0.14 -0.7 1,567,854 + SM_b20775 0.16 -0.0 1,568,026 + SM_b20775 0.21 +0.3 1,568,026 + SM_b20775 0.21 -0.3
Or see this region's nucleotide sequence