Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20689 and SM_b20690 overlap by 4 nucleotides SM_b20690 and SM_b20691 are separated by 51 nucleotides SM_b20691 and SM_b20692 are separated by 309 nucleotides
SM_b20689: SM_b20689 - exodeoxyribonuclease III protein, at 1,492,447 to 1,493,220
_b20689
SM_b20690: SM_b20690 - hypothetical protein, at 1,493,217 to 1,493,543
_b20690
SM_b20691: SM_b20691 - hypothetical protein, at 1,493,595 to 1,493,816
_b20691
SM_b20692: SM_b20692 - 5-keto-D-gluconate 5-reductase, at 1,494,126 to 1,494,932
_b20692
Position (kb)
1493
1494 Strain fitness (log2 ratio)
-1
0
1 at 1492.600 kb on + strand, within SM_b20689 at 1492.708 kb on - strand, within SM_b20689 at 1492.763 kb on - strand, within SM_b20689 at 1492.918 kb on + strand, within SM_b20689 at 1492.918 kb on + strand, within SM_b20689 at 1492.919 kb on - strand, within SM_b20689 at 1492.933 kb on + strand, within SM_b20689 at 1492.934 kb on - strand, within SM_b20689 at 1493.198 kb on + strand at 1493.198 kb on + strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.219 kb on - strand at 1493.325 kb on + strand, within SM_b20690 at 1493.498 kb on + strand, within SM_b20690 at 1493.548 kb on + strand at 1493.549 kb on - strand at 1493.549 kb on - strand at 1493.549 kb on - strand at 1493.597 kb on - strand at 1493.762 kb on + strand, within SM_b20691 at 1493.764 kb on + strand, within SM_b20691 at 1493.764 kb on + strand, within SM_b20691 at 1493.942 kb on + strand at 1493.942 kb on + strand at 1493.943 kb on - strand at 1494.157 kb on + strand at 1494.157 kb on + strand at 1494.157 kb on + strand at 1494.162 kb on + strand at 1494.162 kb on + strand at 1494.163 kb on - strand at 1494.163 kb on - strand at 1494.163 kb on - strand at 1494.163 kb on - strand at 1494.323 kb on - strand, within SM_b20692 at 1494.471 kb on + strand, within SM_b20692 at 1494.653 kb on + strand, within SM_b20692 at 1494.782 kb on + strand, within SM_b20692
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,492,600 + SM_b20689 0.20 +1.1 1,492,708 - SM_b20689 0.34 +0.1 1,492,763 - SM_b20689 0.41 -0.2 1,492,918 + SM_b20689 0.61 -0.8 1,492,918 + SM_b20689 0.61 -0.0 1,492,919 - SM_b20689 0.61 -0.4 1,492,933 + SM_b20689 0.63 +0.5 1,492,934 - SM_b20689 0.63 +0.3 1,493,198 + -0.7 1,493,198 + +0.0 1,493,219 - -0.6 1,493,219 - +0.4 1,493,219 - -0.6 1,493,325 + SM_b20690 0.33 -0.5 1,493,498 + SM_b20690 0.86 -0.1 1,493,548 + -0.1 1,493,549 - -1.0 1,493,549 - -0.6 1,493,549 - -0.4 1,493,597 - +1.0 1,493,762 + SM_b20691 0.75 -0.1 1,493,764 + SM_b20691 0.76 +1.4 1,493,764 + SM_b20691 0.76 +0.0 1,493,942 + +0.0 1,493,942 + -1.0 1,493,943 - +0.0 1,494,157 + +0.2 1,494,157 + -0.8 1,494,157 + -0.2 1,494,162 + -0.6 1,494,162 + +0.2 1,494,163 - -0.2 1,494,163 - -0.2 1,494,163 - +0.4 1,494,163 - +1.0 1,494,323 - SM_b20692 0.24 -0.2 1,494,471 + SM_b20692 0.43 -0.3 1,494,653 + SM_b20692 0.65 +0.1 1,494,782 + SM_b20692 0.81 -0.5
Or see this region's nucleotide sequence