Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20654

Experiment: L-Rhamnose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20652 and SM_b20654 are separated by 596 nucleotidesSM_b20654 and SM_b20655 are separated by 193 nucleotidesSM_b20655 and SM_b20656 are separated by 270 nucleotides SM_b20652: SM_b20652 - asparagine synthetase, at 1,453,451 to 1,455,388 _b20652 SM_b20654: SM_b20654 - hypothetical protein, at 1,455,985 to 1,456,380 _b20654 SM_b20655: SM_b20655 - hypothetical protein, at 1,456,574 to 1,457,050 _b20655 SM_b20656: SM_b20656 - oxidoreductase, at 1,457,321 to 1,458,190 _b20656 Position (kb) 1455 1456 1457Strain fitness (log2 ratio) -2 -1 0 1 2at 1455.098 kb on - strand, within SM_b20652at 1455.156 kb on + strand, within SM_b20652at 1455.157 kb on - strand, within SM_b20652at 1455.157 kb on - strand, within SM_b20652at 1455.157 kb on - strand, within SM_b20652at 1455.346 kb on + strandat 1455.347 kb on - strandat 1455.480 kb on + strandat 1455.675 kb on - strandat 1455.747 kb on + strandat 1455.747 kb on + strandat 1455.747 kb on + strandat 1455.748 kb on - strandat 1455.748 kb on - strandat 1455.792 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.861 kb on + strandat 1455.862 kb on - strandat 1455.862 kb on - strandat 1455.862 kb on - strandat 1455.862 kb on - strandat 1455.904 kb on + strandat 1455.904 kb on + strandat 1455.985 kb on - strandat 1456.007 kb on + strandat 1456.048 kb on - strand, within SM_b20654at 1456.048 kb on - strand, within SM_b20654at 1456.094 kb on + strandat 1456.095 kb on - strand, within SM_b20654at 1456.125 kb on + strand, within SM_b20654at 1456.125 kb on + strand, within SM_b20654at 1456.125 kb on + strand, within SM_b20654at 1456.232 kb on + strand, within SM_b20654at 1456.233 kb on - strand, within SM_b20654at 1456.330 kb on - strand, within SM_b20654at 1456.371 kb on + strandat 1456.372 kb on - strandat 1456.378 kb on + strandat 1456.416 kb on + strandat 1456.417 kb on - strandat 1456.417 kb on - strandat 1456.487 kb on + strandat 1456.585 kb on + strandat 1456.635 kb on - strand, within SM_b20655at 1456.635 kb on - strand, within SM_b20655at 1456.797 kb on - strand, within SM_b20655at 1457.008 kb on - strandat 1457.008 kb on - strandat 1457.049 kb on - strandat 1457.054 kb on + strandat 1457.108 kb on - strandat 1457.320 kb on + strandat 1457.320 kb on + strandat 1457.321 kb on - strandat 1457.321 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
remove
1,455,098 - SM_b20652 0.85 -2.0
1,455,156 + SM_b20652 0.88 -1.0
1,455,157 - SM_b20652 0.88 -0.1
1,455,157 - SM_b20652 0.88 -0.4
1,455,157 - SM_b20652 0.88 +0.4
1,455,346 + +0.4
1,455,347 - +1.0
1,455,480 + -0.0
1,455,675 - -1.6
1,455,747 + +0.3
1,455,747 + +0.0
1,455,747 + +0.5
1,455,748 - -0.1
1,455,748 - -0.3
1,455,792 + +0.6
1,455,861 + -0.2
1,455,861 + +0.3
1,455,861 + -0.8
1,455,861 + +1.7
1,455,861 + +0.2
1,455,861 + +0.1
1,455,862 - -0.5
1,455,862 - -0.0
1,455,862 - +2.0
1,455,862 - +0.4
1,455,904 + +0.1
1,455,904 + +0.2
1,455,985 - -0.6
1,456,007 + -0.3
1,456,048 - SM_b20654 0.16 -0.0
1,456,048 - SM_b20654 0.16 +1.8
1,456,094 + +0.4
1,456,095 - SM_b20654 0.28 -0.3
1,456,125 + SM_b20654 0.35 +0.1
1,456,125 + SM_b20654 0.35 +0.7
1,456,125 + SM_b20654 0.35 +0.4
1,456,232 + SM_b20654 0.62 +0.6
1,456,233 - SM_b20654 0.63 +0.4
1,456,330 - SM_b20654 0.87 -0.2
1,456,371 + +0.6
1,456,372 - +0.9
1,456,378 + -0.2
1,456,416 + -0.3
1,456,417 - +0.4
1,456,417 - +0.2
1,456,487 + -0.1
1,456,585 + -0.1
1,456,635 - SM_b20655 0.13 -0.2
1,456,635 - SM_b20655 0.13 -0.1
1,456,797 - SM_b20655 0.47 -0.6
1,457,008 - +0.4
1,457,008 - +1.1
1,457,049 - -0.4
1,457,054 + +1.3
1,457,108 - -0.6
1,457,320 + -0.5
1,457,320 + -0.4
1,457,321 - +0.1
1,457,321 - +0.0

Or see this region's nucleotide sequence