Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20652 and SM_b20654 are separated by 596 nucleotides SM_b20654 and SM_b20655 are separated by 193 nucleotides SM_b20655 and SM_b20656 are separated by 270 nucleotides
SM_b20652: SM_b20652 - asparagine synthetase, at 1,453,451 to 1,455,388
_b20652
SM_b20654: SM_b20654 - hypothetical protein, at 1,455,985 to 1,456,380
_b20654
SM_b20655: SM_b20655 - hypothetical protein, at 1,456,574 to 1,457,050
_b20655
SM_b20656: SM_b20656 - oxidoreductase, at 1,457,321 to 1,458,190
_b20656
Position (kb)
1455
1456
1457 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1455.098 kb on - strand, within SM_b20652 at 1455.156 kb on + strand, within SM_b20652 at 1455.157 kb on - strand, within SM_b20652 at 1455.157 kb on - strand, within SM_b20652 at 1455.157 kb on - strand, within SM_b20652 at 1455.346 kb on + strand at 1455.347 kb on - strand at 1455.480 kb on + strand at 1455.675 kb on - strand at 1455.747 kb on + strand at 1455.747 kb on + strand at 1455.747 kb on + strand at 1455.748 kb on - strand at 1455.748 kb on - strand at 1455.792 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.862 kb on - strand at 1455.862 kb on - strand at 1455.862 kb on - strand at 1455.862 kb on - strand at 1455.904 kb on + strand at 1455.904 kb on + strand at 1455.985 kb on - strand at 1456.007 kb on + strand at 1456.048 kb on - strand, within SM_b20654 at 1456.048 kb on - strand, within SM_b20654 at 1456.094 kb on + strand at 1456.095 kb on - strand, within SM_b20654 at 1456.125 kb on + strand, within SM_b20654 at 1456.125 kb on + strand, within SM_b20654 at 1456.125 kb on + strand, within SM_b20654 at 1456.232 kb on + strand, within SM_b20654 at 1456.233 kb on - strand, within SM_b20654 at 1456.330 kb on - strand, within SM_b20654 at 1456.371 kb on + strand at 1456.372 kb on - strand at 1456.378 kb on + strand at 1456.416 kb on + strand at 1456.417 kb on - strand at 1456.417 kb on - strand at 1456.487 kb on + strand at 1456.585 kb on + strand at 1456.635 kb on - strand, within SM_b20655 at 1456.635 kb on - strand, within SM_b20655 at 1456.797 kb on - strand, within SM_b20655 at 1457.008 kb on - strand at 1457.008 kb on - strand at 1457.049 kb on - strand at 1457.054 kb on + strand at 1457.108 kb on - strand at 1457.320 kb on + strand at 1457.320 kb on + strand at 1457.321 kb on - strand at 1457.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,455,098 - SM_b20652 0.85 -2.0 1,455,156 + SM_b20652 0.88 -1.0 1,455,157 - SM_b20652 0.88 -0.1 1,455,157 - SM_b20652 0.88 -0.4 1,455,157 - SM_b20652 0.88 +0.4 1,455,346 + +0.4 1,455,347 - +1.0 1,455,480 + -0.0 1,455,675 - -1.6 1,455,747 + +0.3 1,455,747 + +0.0 1,455,747 + +0.5 1,455,748 - -0.1 1,455,748 - -0.3 1,455,792 + +0.6 1,455,861 + -0.2 1,455,861 + +0.3 1,455,861 + -0.8 1,455,861 + +1.7 1,455,861 + +0.2 1,455,861 + +0.1 1,455,862 - -0.5 1,455,862 - -0.0 1,455,862 - +2.0 1,455,862 - +0.4 1,455,904 + +0.1 1,455,904 + +0.2 1,455,985 - -0.6 1,456,007 + -0.3 1,456,048 - SM_b20654 0.16 -0.0 1,456,048 - SM_b20654 0.16 +1.8 1,456,094 + +0.4 1,456,095 - SM_b20654 0.28 -0.3 1,456,125 + SM_b20654 0.35 +0.1 1,456,125 + SM_b20654 0.35 +0.7 1,456,125 + SM_b20654 0.35 +0.4 1,456,232 + SM_b20654 0.62 +0.6 1,456,233 - SM_b20654 0.63 +0.4 1,456,330 - SM_b20654 0.87 -0.2 1,456,371 + +0.6 1,456,372 - +0.9 1,456,378 + -0.2 1,456,416 + -0.3 1,456,417 - +0.4 1,456,417 - +0.2 1,456,487 + -0.1 1,456,585 + -0.1 1,456,635 - SM_b20655 0.13 -0.2 1,456,635 - SM_b20655 0.13 -0.1 1,456,797 - SM_b20655 0.47 -0.6 1,457,008 - +0.4 1,457,008 - +1.1 1,457,049 - -0.4 1,457,054 + +1.3 1,457,108 - -0.6 1,457,320 + -0.5 1,457,320 + -0.4 1,457,321 - +0.1 1,457,321 - +0.0
Or see this region's nucleotide sequence