Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20647

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21524 and SM_b20647 are separated by 296 nucleotidesSM_b20647 and SM_b20648 are separated by 439 nucleotides SM_b21524: SM_b21524 - septum formation inhibitor, at 1,447,281 to 1,448,030 _b21524 SM_b20647: SM_b20647 - hypothetical protein, at 1,448,327 to 1,448,578 _b20647 SM_b20648: SM_b20648 - oxidoreductase, at 1,449,018 to 1,450,055 _b20648 Position (kb) 1448 1449Strain fitness (log2 ratio) -1 0 1at 1447.376 kb on - strand, within SM_b21524at 1447.484 kb on + strand, within SM_b21524at 1447.485 kb on - strand, within SM_b21524at 1448.041 kb on + strandat 1448.041 kb on + strandat 1448.058 kb on + strandat 1448.206 kb on - strandat 1448.347 kb on + strandat 1448.366 kb on + strand, within SM_b20647at 1448.366 kb on + strand, within SM_b20647at 1448.366 kb on + strand, within SM_b20647at 1448.367 kb on - strand, within SM_b20647at 1448.367 kb on - strand, within SM_b20647at 1448.367 kb on - strand, within SM_b20647at 1448.367 kb on - strand, within SM_b20647at 1448.830 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,447,376 - SM_b21524 0.13 -1.0
1,447,484 + SM_b21524 0.27 +0.1
1,447,485 - SM_b21524 0.27 -0.3
1,448,041 + -0.1
1,448,041 + -1.1
1,448,058 + +0.0
1,448,206 - -0.1
1,448,347 + -0.4
1,448,366 + SM_b20647 0.15 +0.4
1,448,366 + SM_b20647 0.15 +1.1
1,448,366 + SM_b20647 0.15 +0.2
1,448,367 - SM_b20647 0.16 +1.2
1,448,367 - SM_b20647 0.16 +0.1
1,448,367 - SM_b20647 0.16 -0.2
1,448,367 - SM_b20647 0.16 +0.1
1,448,830 + -0.0

Or see this region's nucleotide sequence