Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20408 and SM_b20409 overlap by 4 nucleotides SM_b20409 and SM_b20410 are separated by 68 nucleotides SM_b20410 and SM_b20411 are separated by 15 nucleotides SM_b20411 and SM_b20412 are separated by 30 nucleotides SM_b20412 and SM_b20413 overlap by 4 nucleotides SM_b20413 and SM_b20414 are separated by 180 nucleotides
SM_b20408: SM_b20408 - hypothetical protein, at 424,347 to 424,844
_b20408
SM_b20409: SM_b20409 - 3-oxoacyl-ACP reductase, at 424,841 to 425,671
_b20409
SM_b20410: SM_b20410 - glycine-betaine-binding protein, at 425,740 to 426,678
_b20410
SM_b20411: SM_b20411 - hypothetical protein, at 426,694 to 426,942
_b20411
SM_b20412: SM_b20412 - hypothetical protein, at 426,973 to 427,137
_b20412
SM_b20413: SM_b20413 - hypothetical protein, at 427,134 to 427,361
_b20413
SM_b20414: SM_b20414 - hypothetical protein, at 427,542 to 428,015
_b20414
Position (kb) 425
426
427 Strain fitness (log2 ratio) -1
0
1
2 at 424.948 kb on - strand, within SM_b20409 at 424.948 kb on - strand, within SM_b20409 at 425.061 kb on - strand, within SM_b20409 at 425.061 kb on - strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.205 kb on + strand, within SM_b20409 at 425.206 kb on - strand, within SM_b20409 at 425.206 kb on - strand, within SM_b20409 at 425.305 kb on + strand, within SM_b20409 at 425.305 kb on + strand, within SM_b20409 at 425.306 kb on - strand, within SM_b20409 at 425.307 kb on + strand, within SM_b20409 at 425.308 kb on - strand, within SM_b20409 at 425.308 kb on - strand, within SM_b20409 at 425.351 kb on + strand, within SM_b20409 at 425.577 kb on - strand, within SM_b20409 at 425.643 kb on + strand at 425.643 kb on + strand at 425.643 kb on + strand at 425.643 kb on + strand at 425.644 kb on - strand at 425.644 kb on - strand at 425.711 kb on + strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.712 kb on - strand at 425.720 kb on + strand at 425.720 kb on + strand at 425.720 kb on + strand at 425.721 kb on - strand at 425.900 kb on + strand, within SM_b20410 at 425.906 kb on - strand, within SM_b20410 at 425.927 kb on + strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.928 kb on - strand, within SM_b20410 at 425.944 kb on + strand, within SM_b20410 at 425.944 kb on + strand, within SM_b20410 at 425.945 kb on - strand, within SM_b20410 at 426.077 kb on - strand, within SM_b20410 at 426.077 kb on - strand, within SM_b20410 at 426.097 kb on + strand, within SM_b20410 at 426.097 kb on + strand, within SM_b20410 at 426.098 kb on - strand, within SM_b20410 at 426.373 kb on + strand, within SM_b20410 at 426.373 kb on + strand, within SM_b20410 at 426.374 kb on - strand, within SM_b20410 at 426.409 kb on + strand, within SM_b20410 at 426.423 kb on + strand, within SM_b20410 at 426.423 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.428 kb on - strand, within SM_b20410 at 426.428 kb on - strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.465 kb on + strand, within SM_b20410 at 426.465 kb on + strand, within SM_b20410 at 426.466 kb on - strand, within SM_b20410 at 426.466 kb on - strand, within SM_b20410 at 426.702 kb on + strand at 426.815 kb on + strand, within SM_b20411 at 426.816 kb on - strand, within SM_b20411 at 426.816 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 427.081 kb on + strand, within SM_b20412 at 427.081 kb on + strand, within SM_b20412 at 427.083 kb on + strand, within SM_b20412 at 427.084 kb on - strand, within SM_b20412 at 427.215 kb on + strand, within SM_b20413 at 427.397 kb on + strand at 427.397 kb on + strand at 427.646 kb on - strand, within SM_b20414
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 424,948 - SM_b20409 0.13 -0.8 424,948 - SM_b20409 0.13 +0.8 425,061 - SM_b20409 0.26 +0.1 425,061 - SM_b20409 0.26 -0.5 425,205 + SM_b20409 0.44 -0.5 425,205 + SM_b20409 0.44 +0.3 425,205 + SM_b20409 0.44 -0.7 425,206 - SM_b20409 0.44 -0.1 425,206 - SM_b20409 0.44 +1.4 425,305 + SM_b20409 0.56 +0.0 425,305 + SM_b20409 0.56 +0.2 425,306 - SM_b20409 0.56 -0.3 425,307 + SM_b20409 0.56 -1.0 425,308 - SM_b20409 0.56 -0.5 425,308 - SM_b20409 0.56 +0.5 425,351 + SM_b20409 0.61 +0.1 425,577 - SM_b20409 0.89 -0.1 425,643 + -1.4 425,643 + +0.2 425,643 + -0.5 425,643 + -0.6 425,644 - -0.2 425,644 - -0.1 425,711 + -0.2 425,712 - +0.2 425,712 - -0.6 425,712 - -1.2 425,712 - +0.3 425,712 - +1.1 425,720 + +0.3 425,720 + +0.1 425,720 + -0.1 425,721 - -0.1 425,900 + SM_b20410 0.17 +0.8 425,906 - SM_b20410 0.18 -0.1 425,927 + SM_b20410 0.20 -0.2 425,928 - SM_b20410 0.20 +0.5 425,928 - SM_b20410 0.20 -0.2 425,928 - SM_b20410 0.20 +0.8 425,928 - SM_b20410 0.20 +1.9 425,928 - SM_b20410 0.20 +0.1 425,928 - SM_b20410 0.20 +0.1 425,944 + SM_b20410 0.22 -0.1 425,944 + SM_b20410 0.22 -0.3 425,945 - SM_b20410 0.22 +0.5 426,077 - SM_b20410 0.36 -1.7 426,077 - SM_b20410 0.36 +0.4 426,097 + SM_b20410 0.38 +1.2 426,097 + SM_b20410 0.38 -0.4 426,098 - SM_b20410 0.38 +1.1 426,373 + SM_b20410 0.67 +0.2 426,373 + SM_b20410 0.67 +0.5 426,374 - SM_b20410 0.68 +0.4 426,409 + SM_b20410 0.71 -0.7 426,423 + SM_b20410 0.73 -0.2 426,423 + SM_b20410 0.73 +0.0 426,427 + SM_b20410 0.73 -1.0 426,427 + SM_b20410 0.73 -1.4 426,427 + SM_b20410 0.73 +0.4 426,427 + SM_b20410 0.73 -0.3 426,427 + SM_b20410 0.73 +0.1 426,427 + SM_b20410 0.73 -0.0 426,428 - SM_b20410 0.73 +0.2 426,428 - SM_b20410 0.73 +0.2 426,429 + SM_b20410 0.73 -0.3 426,429 + SM_b20410 0.73 +0.3 426,429 + SM_b20410 0.73 +0.4 426,465 + SM_b20410 0.77 +0.0 426,465 + SM_b20410 0.77 +0.5 426,466 - SM_b20410 0.77 -0.0 426,466 - SM_b20410 0.77 +0.4 426,702 + -0.2 426,815 + SM_b20411 0.49 +1.1 426,816 - SM_b20411 0.49 +0.0 426,816 - SM_b20411 0.49 +0.2 426,862 - SM_b20411 0.67 -0.3 426,862 - SM_b20411 0.67 -0.2 426,862 - SM_b20411 0.67 -0.2 427,081 + SM_b20412 0.65 +0.7 427,081 + SM_b20412 0.65 -0.4 427,083 + SM_b20412 0.67 -0.3 427,084 - SM_b20412 0.67 -0.3 427,215 + SM_b20413 0.36 +0.3 427,397 + +0.1 427,397 + -0.8 427,646 - SM_b20414 0.22 +0.3
Or see this region's nucleotide sequence