Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20301 and SM_b20302 are separated by 147 nucleotides SM_b20302 and SM_b20303 are separated by 196 nucleotides SM_b20303 and SM_b20304 are separated by 56 nucleotides
SM_b20301: SM_b20301 - dehydgrogenase, at 308,842 to 309,972
_b20301
SM_b20302: SM_b20302 - hypothetical protein, at 310,120 to 310,281
_b20302
SM_b20303: SM_b20303 - hypothetical protein, at 310,478 to 310,705
_b20303
SM_b20304: SM_b20304 - ISRm2011-2 transposase, C-terminal portion, at 310,762 to 311,358
_b20304
SM_b20306: SM_b20306 - TRm2011-2 protein, at 311,002 to 311,373
_b20306
Position (kb) 310
311 Strain fitness (log2 ratio) -1
0
1 at 309.162 kb on + strand, within SM_b20301 at 309.163 kb on - strand, within SM_b20301 at 309.164 kb on + strand, within SM_b20301 at 309.197 kb on + strand, within SM_b20301 at 309.218 kb on - strand, within SM_b20301 at 309.314 kb on + strand, within SM_b20301 at 309.315 kb on - strand, within SM_b20301 at 309.315 kb on - strand, within SM_b20301 at 309.463 kb on + strand, within SM_b20301 at 309.463 kb on + strand, within SM_b20301 at 309.463 kb on + strand, within SM_b20301 at 309.464 kb on - strand, within SM_b20301 at 309.638 kb on + strand, within SM_b20301 at 309.639 kb on - strand, within SM_b20301 at 309.889 kb on - strand at 310.021 kb on + strand at 310.227 kb on - strand, within SM_b20302 at 310.237 kb on + strand, within SM_b20302 at 310.238 kb on - strand, within SM_b20302 at 310.238 kb on - strand, within SM_b20302 at 310.318 kb on - strand at 310.373 kb on - strand at 310.433 kb on + strand at 310.462 kb on + strand at 310.548 kb on - strand, within SM_b20303 at 310.548 kb on - strand, within SM_b20303 at 310.622 kb on + strand, within SM_b20303 at 310.623 kb on - strand, within SM_b20303 at 310.704 kb on - strand at 310.727 kb on - strand at 310.756 kb on - strand at 310.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 309,162 + SM_b20301 0.28 -0.3 309,163 - SM_b20301 0.28 -1.5 309,164 + SM_b20301 0.28 +0.7 309,197 + SM_b20301 0.31 -0.3 309,218 - SM_b20301 0.33 -0.0 309,314 + SM_b20301 0.42 -0.4 309,315 - SM_b20301 0.42 -0.0 309,315 - SM_b20301 0.42 +0.5 309,463 + SM_b20301 0.55 -0.5 309,463 + SM_b20301 0.55 -0.6 309,463 + SM_b20301 0.55 +1.1 309,464 - SM_b20301 0.55 -0.3 309,638 + SM_b20301 0.70 -0.5 309,639 - SM_b20301 0.70 -0.4 309,889 - +0.2 310,021 + -0.8 310,227 - SM_b20302 0.66 -0.5 310,237 + SM_b20302 0.72 +1.4 310,238 - SM_b20302 0.73 -0.1 310,238 - SM_b20302 0.73 +0.4 310,318 - -0.3 310,373 - -0.4 310,433 + -0.6 310,462 + -0.3 310,548 - SM_b20303 0.31 +0.3 310,548 - SM_b20303 0.31 +0.1 310,622 + SM_b20303 0.63 -0.1 310,623 - SM_b20303 0.64 +0.1 310,704 - -0.1 310,727 - -1.3 310,756 - -0.6 310,756 - +0.0
Or see this region's nucleotide sequence