Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20265 and SM_b20266 overlap by 8 nucleotides SM_b20266 and SM_b20267 are separated by 0 nucleotides SM_b20267 and SM_b20268 are separated by 14 nucleotides
SM_b20265: SM_b20265 - amino acid ABC transporter permease, at 270,069 to 270,722
_b20265
SM_b20266: SM_b20266 - amino acid ABC transporter ATP-binding protein, at 270,715 to 271,437
_b20266
SM_b20267: SM_b20267 - D-amino acid dehydrogenase, at 271,438 to 272,679
_b20267
SM_b20268: SM_b20268 - hydroxyproline-2-epimerase, at 272,694 to 273,695
_b20268
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.514 kb on + strand, within SM_b20265 at 270.515 kb on - strand, within SM_b20265 at 270.596 kb on - strand, within SM_b20265 at 270.596 kb on - strand, within SM_b20265 at 270.651 kb on + strand, within SM_b20265 at 270.652 kb on - strand, within SM_b20265 at 270.652 kb on - strand, within SM_b20265 at 271.183 kb on + strand, within SM_b20266 at 271.183 kb on + strand, within SM_b20266 at 271.184 kb on - strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.435 kb on + strand at 271.596 kb on + strand, within SM_b20267 at 271.864 kb on + strand, within SM_b20267 at 272.001 kb on + strand, within SM_b20267 at 272.045 kb on - strand, within SM_b20267 at 272.266 kb on - strand, within SM_b20267 at 272.936 kb on - strand, within SM_b20268 at 273.075 kb on + strand, within SM_b20268 at 273.075 kb on + strand, within SM_b20268 at 273.076 kb on - strand, within SM_b20268 at 273.076 kb on - strand, within SM_b20268 at 273.196 kb on - strand, within SM_b20268 at 273.257 kb on + strand, within SM_b20268
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 270,514 + SM_b20265 0.68 +0.6 270,515 - SM_b20265 0.68 +1.8 270,596 - SM_b20265 0.81 +0.3 270,596 - SM_b20265 0.81 -0.4 270,651 + SM_b20265 0.89 -0.2 270,652 - SM_b20265 0.89 -0.2 270,652 - SM_b20265 0.89 -0.2 271,183 + SM_b20266 0.65 +0.1 271,183 + SM_b20266 0.65 -1.0 271,184 - SM_b20266 0.65 +0.3 271,185 + SM_b20266 0.65 -0.9 271,185 + SM_b20266 0.65 +0.1 271,185 + SM_b20266 0.65 -0.8 271,185 + SM_b20266 0.65 -0.1 271,186 - SM_b20266 0.65 +0.3 271,186 - SM_b20266 0.65 +0.6 271,186 - SM_b20266 0.65 +0.2 271,186 - SM_b20266 0.65 -0.4 271,186 - SM_b20266 0.65 +0.3 271,186 - SM_b20266 0.65 -1.1 271,435 + -0.7 271,596 + SM_b20267 0.13 +0.2 271,864 + SM_b20267 0.34 +1.6 272,001 + SM_b20267 0.45 -0.1 272,045 - SM_b20267 0.49 -0.3 272,266 - SM_b20267 0.67 -0.1 272,936 - SM_b20268 0.24 -0.2 273,075 + SM_b20268 0.38 +0.3 273,075 + SM_b20268 0.38 -2.1 273,076 - SM_b20268 0.38 -0.2 273,076 - SM_b20268 0.38 -0.1 273,196 - SM_b20268 0.50 -0.2 273,257 + SM_b20268 0.56 +0.0
Or see this region's nucleotide sequence