Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20263 and SM_b20264 are separated by 66 nucleotides SM_b20264 and SM_b20265 are separated by 12 nucleotides SM_b20265 and SM_b20266 overlap by 8 nucleotides SM_b20266 and SM_b20267 are separated by 0 nucleotides
SM_b20263: SM_b20263 - amino acid ABC transporter substrate-binding protein, at 268,518 to 269,324
_b20263
SM_b20264: SM_b20264 - amino acid ABC transporter permease, at 269,391 to 270,056
_b20264
SM_b20265: SM_b20265 - amino acid ABC transporter permease, at 270,069 to 270,722
_b20265
SM_b20266: SM_b20266 - amino acid ABC transporter ATP-binding protein, at 270,715 to 271,437
_b20266
SM_b20267: SM_b20267 - D-amino acid dehydrogenase, at 271,438 to 272,679
_b20267
Position (kb) 270
271 Strain fitness (log2 ratio) -1
0
1
2 at 269.081 kb on + strand at 269.196 kb on + strand, within SM_b20263 at 269.400 kb on + strand at 269.400 kb on + strand at 269.400 kb on + strand at 269.401 kb on - strand at 269.614 kb on - strand, within SM_b20264 at 269.614 kb on - strand, within SM_b20264 at 269.661 kb on + strand, within SM_b20264 at 269.661 kb on + strand, within SM_b20264 at 269.663 kb on + strand, within SM_b20264 at 269.663 kb on + strand, within SM_b20264 at 269.664 kb on - strand, within SM_b20264 at 269.704 kb on - strand, within SM_b20264 at 269.704 kb on - strand, within SM_b20264 at 269.988 kb on + strand, within SM_b20264 at 269.988 kb on + strand, within SM_b20264 at 269.989 kb on - strand, within SM_b20264 at 269.991 kb on + strand at 269.992 kb on - strand at 270.214 kb on - strand, within SM_b20265 at 270.358 kb on - strand, within SM_b20265 at 270.514 kb on + strand, within SM_b20265 at 270.515 kb on - strand, within SM_b20265 at 270.596 kb on - strand, within SM_b20265 at 270.596 kb on - strand, within SM_b20265 at 270.651 kb on + strand, within SM_b20265 at 270.652 kb on - strand, within SM_b20265 at 270.652 kb on - strand, within SM_b20265 at 271.183 kb on + strand, within SM_b20266 at 271.183 kb on + strand, within SM_b20266 at 271.184 kb on - strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.185 kb on + strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.186 kb on - strand, within SM_b20266 at 271.435 kb on + strand at 271.596 kb on + strand, within SM_b20267
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 269,081 + -0.8 269,196 + SM_b20263 0.84 -0.1 269,400 + -0.3 269,400 + -0.1 269,400 + +0.2 269,401 - +0.3 269,614 - SM_b20264 0.33 -1.3 269,614 - SM_b20264 0.33 +0.0 269,661 + SM_b20264 0.41 -1.0 269,661 + SM_b20264 0.41 +0.3 269,663 + SM_b20264 0.41 +0.3 269,663 + SM_b20264 0.41 -0.3 269,664 - SM_b20264 0.41 -0.7 269,704 - SM_b20264 0.47 +0.2 269,704 - SM_b20264 0.47 -1.0 269,988 + SM_b20264 0.90 -0.8 269,988 + SM_b20264 0.90 -0.5 269,989 - SM_b20264 0.90 +0.3 269,991 + -0.2 269,992 - +0.1 270,214 - SM_b20265 0.22 +0.5 270,358 - SM_b20265 0.44 +1.4 270,514 + SM_b20265 0.68 +0.6 270,515 - SM_b20265 0.68 +1.8 270,596 - SM_b20265 0.81 +0.3 270,596 - SM_b20265 0.81 -0.4 270,651 + SM_b20265 0.89 -0.2 270,652 - SM_b20265 0.89 -0.2 270,652 - SM_b20265 0.89 -0.2 271,183 + SM_b20266 0.65 +0.1 271,183 + SM_b20266 0.65 -1.0 271,184 - SM_b20266 0.65 +0.3 271,185 + SM_b20266 0.65 -0.9 271,185 + SM_b20266 0.65 +0.1 271,185 + SM_b20266 0.65 -0.8 271,185 + SM_b20266 0.65 -0.1 271,186 - SM_b20266 0.65 +0.3 271,186 - SM_b20266 0.65 +0.6 271,186 - SM_b20266 0.65 +0.2 271,186 - SM_b20266 0.65 -0.4 271,186 - SM_b20266 0.65 +0.3 271,186 - SM_b20266 0.65 -1.1 271,435 + -0.7 271,596 + SM_b20267 0.13 +0.2
Or see this region's nucleotide sequence