Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20075

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20073 and SM_b20074 are separated by 195 nucleotidesSM_b20074 and SM_b20075 are separated by 48 nucleotidesSM_b20075 and SM_b20076 are separated by 98 nucleotides SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188 _b20073 SM_b20074: SM_b20074 - hypothetical protein, at 83,384 to 83,626 _b20074 SM_b20075: SM_b20075 - hypothetical protein, at 83,675 to 83,866 _b20075 SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981 _b20076 Position (kb) 83 84Strain fitness (log2 ratio) -1 0 1at 82.716 kb on + strand, within SM_b20073at 82.716 kb on + strand, within SM_b20073at 82.971 kb on + strand, within SM_b20073at 82.971 kb on + strand, within SM_b20073at 82.978 kb on + strand, within SM_b20073at 82.978 kb on + strand, within SM_b20073at 83.268 kb on - strandat 83.380 kb on + strandat 83.380 kb on + strandat 83.381 kb on - strandat 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.555 kb on + strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.556 kb on - strand, within SM_b20074at 83.759 kb on + strand, within SM_b20075at 83.760 kb on - strand, within SM_b20075at 83.927 kb on + strandat 83.927 kb on + strandat 83.928 kb on - strandat 83.928 kb on - strandat 83.964 kb on + strandat 83.965 kb on - strandat 83.965 kb on - strandat 84.215 kb on + strand, within SM_b20076at 84.517 kb on + strand, within SM_b20076at 84.562 kb on + strand, within SM_b20076at 84.563 kb on - strand, within SM_b20076at 84.598 kb on + strand, within SM_b20076at 84.598 kb on + strand, within SM_b20076at 84.599 kb on - strand, within SM_b20076

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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82,716 + SM_b20073 0.45 -0.1
82,716 + SM_b20073 0.45 +0.0
82,971 + SM_b20073 0.75 -0.7
82,971 + SM_b20073 0.75 +0.8
82,978 + SM_b20073 0.75 +0.6
82,978 + SM_b20073 0.75 -0.0
83,268 - +0.0
83,380 + -0.9
83,380 + +0.0
83,381 - +0.2
83,555 + SM_b20074 0.70 +0.1
83,555 + SM_b20074 0.70 -0.3
83,555 + SM_b20074 0.70 -0.5
83,555 + SM_b20074 0.70 -0.2
83,556 - SM_b20074 0.71 +0.3
83,556 - SM_b20074 0.71 -0.9
83,556 - SM_b20074 0.71 +0.4
83,759 + SM_b20075 0.44 +0.3
83,760 - SM_b20075 0.44 +0.4
83,927 + -0.2
83,927 + -1.0
83,928 - +0.1
83,928 - -0.3
83,964 + +1.0
83,965 - -0.3
83,965 - -0.0
84,215 + SM_b20076 0.25 -0.0
84,517 + SM_b20076 0.54 -0.1
84,562 + SM_b20076 0.59 -0.7
84,563 - SM_b20076 0.59 +0.1
84,598 + SM_b20076 0.62 -0.9
84,598 + SM_b20076 0.62 -0.3
84,599 - SM_b20076 0.62 -0.1

Or see this region's nucleotide sequence