Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_952

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_950 and Pf1N1B4_951 are separated by 41 nucleotidesPf1N1B4_951 and Pf1N1B4_952 overlap by 4 nucleotidesPf1N1B4_952 and Pf1N1B4_953 are separated by 913 nucleotides Pf1N1B4_950 - Cell division protein FtsL, at 1,081,907 to 1,082,155 _950 Pf1N1B4_951 - rRNA small subunit methyltransferase H, at 1,082,197 to 1,083,144 _951 Pf1N1B4_952 - Cell division protein MraZ, at 1,083,141 to 1,083,464 _952 Pf1N1B4_953 - rRNA small subunit methyltransferase I, at 1,084,378 to 1,085,232 _953 Position (kb) 1083 1084Strain fitness (log2 ratio) -2 -1 0 1at 1083.192 kb on - strand, within Pf1N1B4_952at 1083.296 kb on - strand, within Pf1N1B4_952at 1083.360 kb on - strand, within Pf1N1B4_952at 1083.370 kb on - strand, within Pf1N1B4_952at 1083.370 kb on - strand, within Pf1N1B4_952at 1083.455 kb on - strandat 1083.496 kb on - strandat 1083.615 kb on - strandat 1083.626 kb on - strandat 1083.626 kb on - strandat 1083.674 kb on - strandat 1083.674 kb on - strandat 1083.676 kb on - strandat 1083.676 kb on - strandat 1083.676 kb on - strandat 1083.676 kb on - strandat 1083.676 kb on - strandat 1083.676 kb on - strandat 1083.676 kb on - strandat 1083.676 kb on - strandat 1083.676 kb on - strandat 1083.711 kb on - strandat 1083.740 kb on - strandat 1083.748 kb on - strandat 1083.748 kb on - strandat 1083.748 kb on - strandat 1083.748 kb on - strandat 1083.748 kb on - strandat 1083.748 kb on - strandat 1083.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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1,083,192 - Pf1N1B4_952 0.16 -2.2
1,083,296 - Pf1N1B4_952 0.48 +0.8
1,083,360 - Pf1N1B4_952 0.68 +0.1
1,083,370 - Pf1N1B4_952 0.71 -0.2
1,083,370 - Pf1N1B4_952 0.71 -0.6
1,083,455 - -1.1
1,083,496 - +0.1
1,083,615 - -1.6
1,083,626 - -0.6
1,083,626 - -1.4
1,083,674 - -2.7
1,083,674 - -1.0
1,083,676 - -0.5
1,083,676 - -1.9
1,083,676 - -0.8
1,083,676 - -1.3
1,083,676 - +0.1
1,083,676 - -2.0
1,083,676 - -1.5
1,083,676 - -0.2
1,083,676 - -0.9
1,083,711 - -2.2
1,083,740 - -1.6
1,083,748 - -2.3
1,083,748 - -2.0
1,083,748 - -1.4
1,083,748 - -1.9
1,083,748 - -1.4
1,083,748 - -1.5
1,083,748 - -2.3

Or see this region's nucleotide sequence