Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_691 and Pf1N1B4_692 are separated by 15 nucleotides Pf1N1B4_692 and Pf1N1B4_693 overlap by 4 nucleotides
Pf1N1B4_691 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 789,195 to 790,250
_691
Pf1N1B4_692 - ABC spermidine/putrescine transporter, inner membrane subunit, at 790,266 to 791,114
_692
Pf1N1B4_693 - ABC spermidine/putrescine transporter, inner membrane subunit, at 791,111 to 791,917
_693
Position (kb) 790
791
792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.282 kb on - strand at 789.328 kb on - strand, within Pf1N1B4_691 at 789.328 kb on - strand, within Pf1N1B4_691 at 789.552 kb on - strand, within Pf1N1B4_691 at 789.552 kb on - strand, within Pf1N1B4_691 at 789.586 kb on + strand, within Pf1N1B4_691 at 789.587 kb on - strand, within Pf1N1B4_691 at 790.025 kb on + strand, within Pf1N1B4_691 at 790.044 kb on - strand, within Pf1N1B4_691 at 790.044 kb on - strand, within Pf1N1B4_691 at 790.390 kb on + strand, within Pf1N1B4_692 at 790.390 kb on + strand, within Pf1N1B4_692 at 790.390 kb on + strand, within Pf1N1B4_692 at 790.390 kb on + strand, within Pf1N1B4_692 at 790.390 kb on + strand, within Pf1N1B4_692 at 790.390 kb on + strand, within Pf1N1B4_692 at 790.390 kb on + strand, within Pf1N1B4_692 at 790.391 kb on - strand, within Pf1N1B4_692 at 790.391 kb on - strand, within Pf1N1B4_692 at 790.391 kb on - strand, within Pf1N1B4_692 at 790.391 kb on - strand, within Pf1N1B4_692 at 790.427 kb on - strand, within Pf1N1B4_692 at 790.427 kb on - strand, within Pf1N1B4_692 at 790.435 kb on + strand, within Pf1N1B4_692 at 790.436 kb on - strand, within Pf1N1B4_692 at 790.436 kb on - strand, within Pf1N1B4_692 at 790.798 kb on + strand, within Pf1N1B4_692 at 790.798 kb on + strand, within Pf1N1B4_692 at 790.799 kb on - strand at 790.799 kb on - strand, within Pf1N1B4_692 at 790.799 kb on - strand, within Pf1N1B4_692 at 790.799 kb on - strand, within Pf1N1B4_692 at 790.933 kb on + strand at 790.934 kb on - strand, within Pf1N1B4_692 at 790.948 kb on + strand, within Pf1N1B4_692 at 790.948 kb on + strand, within Pf1N1B4_692 at 790.948 kb on + strand, within Pf1N1B4_692 at 790.949 kb on - strand, within Pf1N1B4_692 at 790.949 kb on - strand, within Pf1N1B4_692 at 790.949 kb on - strand, within Pf1N1B4_692 at 791.154 kb on + strand at 791.154 kb on + strand at 791.155 kb on - strand at 791.155 kb on - strand at 791.155 kb on - strand at 791.433 kb on + strand, within Pf1N1B4_693 at 791.530 kb on - strand, within Pf1N1B4_693 at 791.530 kb on - strand, within Pf1N1B4_693 at 791.530 kb on - strand, within Pf1N1B4_693 at 791.530 kb on - strand, within Pf1N1B4_693 at 791.712 kb on + strand, within Pf1N1B4_693 at 791.712 kb on + strand, within Pf1N1B4_693 at 791.713 kb on - strand, within Pf1N1B4_693 at 791.793 kb on + strand at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand, within Pf1N1B4_693 at 791.797 kb on - strand at 791.817 kb on + strand, within Pf1N1B4_693 at 791.877 kb on - strand at 792.113 kb on + strand at 792.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 789,282 - +0.5 789,328 - Pf1N1B4_691 0.13 +0.6 789,328 - Pf1N1B4_691 0.13 +1.0 789,552 - Pf1N1B4_691 0.34 -0.0 789,552 - Pf1N1B4_691 0.34 -0.3 789,586 + Pf1N1B4_691 0.37 +0.1 789,587 - Pf1N1B4_691 0.37 +0.6 790,025 + Pf1N1B4_691 0.79 +1.3 790,044 - Pf1N1B4_691 0.80 +0.7 790,044 - Pf1N1B4_691 0.80 -0.5 790,390 + Pf1N1B4_692 0.15 +0.3 790,390 + Pf1N1B4_692 0.15 +0.6 790,390 + Pf1N1B4_692 0.15 -0.7 790,390 + Pf1N1B4_692 0.15 +0.5 790,390 + Pf1N1B4_692 0.15 -1.7 790,390 + Pf1N1B4_692 0.15 -1.0 790,390 + Pf1N1B4_692 0.15 -1.5 790,391 - Pf1N1B4_692 0.15 -0.7 790,391 - Pf1N1B4_692 0.15 -2.5 790,391 - Pf1N1B4_692 0.15 -0.3 790,391 - Pf1N1B4_692 0.15 +1.1 790,427 - Pf1N1B4_692 0.19 +0.6 790,427 - Pf1N1B4_692 0.19 -0.0 790,435 + Pf1N1B4_692 0.20 -2.0 790,436 - Pf1N1B4_692 0.20 -0.7 790,436 - Pf1N1B4_692 0.20 -0.3 790,798 + Pf1N1B4_692 0.63 -1.5 790,798 + Pf1N1B4_692 0.63 -0.7 790,799 - +0.7 790,799 - Pf1N1B4_692 0.63 -1.5 790,799 - Pf1N1B4_692 0.63 -0.0 790,799 - Pf1N1B4_692 0.63 +0.0 790,933 + +0.3 790,934 - Pf1N1B4_692 0.79 +0.5 790,948 + Pf1N1B4_692 0.80 -0.7 790,948 + Pf1N1B4_692 0.80 +0.1 790,948 + Pf1N1B4_692 0.80 -1.5 790,949 - Pf1N1B4_692 0.80 -1.7 790,949 - Pf1N1B4_692 0.80 +1.3 790,949 - Pf1N1B4_692 0.80 -0.3 791,154 + -0.5 791,154 + -0.2 791,155 - -0.7 791,155 - +1.3 791,155 - -0.7 791,433 + Pf1N1B4_693 0.40 -0.6 791,530 - Pf1N1B4_693 0.52 -0.2 791,530 - Pf1N1B4_693 0.52 -2.2 791,530 - Pf1N1B4_693 0.52 +0.3 791,530 - Pf1N1B4_693 0.52 -0.5 791,712 + Pf1N1B4_693 0.74 +1.3 791,712 + Pf1N1B4_693 0.74 -0.0 791,713 - Pf1N1B4_693 0.75 -0.1 791,793 + -1.5 791,797 - Pf1N1B4_693 0.85 -1.0 791,797 - Pf1N1B4_693 0.85 -1.2 791,797 - Pf1N1B4_693 0.85 -0.1 791,797 - Pf1N1B4_693 0.85 +0.5 791,797 - Pf1N1B4_693 0.85 -0.7 791,797 - -0.3 791,817 + Pf1N1B4_693 0.87 +2.6 791,877 - -0.3 792,113 + +1.3 792,113 + -0.5
Or see this region's nucleotide sequence