Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_6030 and Pf1N1B4_6031 overlap by 4 nucleotides Pf1N1B4_6031 and Pf1N1B4_6032 are separated by 56 nucleotides Pf1N1B4_6032 and Pf1N1B4_6033 are separated by 3 nucleotides Pf1N1B4_6033 and Pf1N1B4_6034 overlap by 4 nucleotides
Pf1N1B4_6030 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 494,561 to 494,965
_6030
Pf1N1B4_6031 - Ribokinase (EC 2.7.1.15) <small>(from data)</small>, at 494,962 to 495,879
_6031
Pf1N1B4_6032 - Ribose operon repressor, at 495,936 to 496,955
_6032
Pf1N1B4_6033 - D-ribose ABC transporter, permease component RbsC <small>(from data)</small>, at 496,959 to 497,936
_6033
Pf1N1B4_6034 - D-ribose ABC transporter, ATPase component RbsA <small>(from data)</small>, at 497,933 to 499,486
_6034
Position (kb) 495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 494.974 kb on - strand at 494.983 kb on + strand at 494.983 kb on + strand at 494.983 kb on + strand at 494.984 kb on - strand at 494.984 kb on - strand at 494.984 kb on - strand at 495.493 kb on + strand, within Pf1N1B4_6031 at 495.494 kb on - strand, within Pf1N1B4_6031 at 495.681 kb on - strand, within Pf1N1B4_6031 at 495.857 kb on - strand at 495.857 kb on - strand at 495.857 kb on - strand at 495.860 kb on - strand at 495.879 kb on + strand at 495.879 kb on + strand at 495.879 kb on + strand at 495.879 kb on + strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.880 kb on - strand at 495.927 kb on - strand at 495.927 kb on - strand at 495.992 kb on + strand at 495.993 kb on - strand at 495.993 kb on - strand at 496.179 kb on - strand, within Pf1N1B4_6032 at 496.179 kb on - strand, within Pf1N1B4_6032 at 496.267 kb on - strand, within Pf1N1B4_6032 at 496.471 kb on + strand, within Pf1N1B4_6032 at 496.636 kb on + strand, within Pf1N1B4_6032 at 496.636 kb on + strand, within Pf1N1B4_6032 at 496.688 kb on - strand, within Pf1N1B4_6032 at 496.706 kb on - strand, within Pf1N1B4_6032 at 496.706 kb on - strand, within Pf1N1B4_6032 at 496.822 kb on + strand, within Pf1N1B4_6032 at 496.823 kb on - strand, within Pf1N1B4_6032 at 496.860 kb on + strand at 496.861 kb on - strand at 496.861 kb on - strand at 496.861 kb on - strand at 496.913 kb on - strand at 496.936 kb on - strand at 496.990 kb on + strand at 496.994 kb on + strand at 496.995 kb on - strand at 496.995 kb on - strand at 496.995 kb on - strand at 496.995 kb on - strand at 497.290 kb on + strand, within Pf1N1B4_6033 at 497.291 kb on - strand, within Pf1N1B4_6033 at 497.399 kb on + strand, within Pf1N1B4_6033 at 497.400 kb on - strand at 497.480 kb on - strand, within Pf1N1B4_6033 at 497.480 kb on - strand, within Pf1N1B4_6033 at 497.507 kb on - strand, within Pf1N1B4_6033 at 497.878 kb on + strand at 497.879 kb on - strand at 497.879 kb on - strand at 497.879 kb on - strand at 497.879 kb on - strand at 497.907 kb on - strand at 497.930 kb on + strand at 497.931 kb on - strand at 497.931 kb on - strand at 497.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 494,974 - -0.4 494,983 + -0.9 494,983 + -0.7 494,983 + -1.9 494,984 - -0.7 494,984 - -0.8 494,984 - -1.5 495,493 + Pf1N1B4_6031 0.58 -3.0 495,494 - Pf1N1B4_6031 0.58 -2.7 495,681 - Pf1N1B4_6031 0.78 -0.9 495,857 - -1.3 495,857 - -1.5 495,857 - -2.4 495,860 - +1.1 495,879 + -1.7 495,879 + -0.9 495,879 + +0.1 495,879 + -1.7 495,880 - -1.1 495,880 - -2.8 495,880 - +0.1 495,880 - -2.5 495,880 - -0.5 495,880 - -2.5 495,880 - -2.1 495,880 - -2.7 495,880 - -1.5 495,880 - -1.9 495,880 - -1.7 495,880 - -1.5 495,880 - -1.7 495,880 - -2.3 495,880 - -1.3 495,880 - -0.9 495,880 - -2.6 495,880 - -0.7 495,880 - -1.7 495,880 - -2.9 495,927 - -1.7 495,927 - -0.4 495,992 + -0.9 495,993 - +0.1 495,993 - +1.1 496,179 - Pf1N1B4_6032 0.24 +1.5 496,179 - Pf1N1B4_6032 0.24 -0.7 496,267 - Pf1N1B4_6032 0.32 +0.8 496,471 + Pf1N1B4_6032 0.52 -2.3 496,636 + Pf1N1B4_6032 0.69 -2.4 496,636 + Pf1N1B4_6032 0.69 -0.9 496,688 - Pf1N1B4_6032 0.74 -1.3 496,706 - Pf1N1B4_6032 0.75 -2.3 496,706 - Pf1N1B4_6032 0.75 -3.3 496,822 + Pf1N1B4_6032 0.87 -0.5 496,823 - Pf1N1B4_6032 0.87 +0.1 496,860 + -2.4 496,861 - -1.3 496,861 - +0.5 496,861 - -0.2 496,913 - -0.5 496,936 - -2.5 496,990 + -1.7 496,994 + -0.9 496,995 - -1.7 496,995 - -3.2 496,995 - -0.7 496,995 - -1.3 497,290 + Pf1N1B4_6033 0.34 -0.7 497,291 - Pf1N1B4_6033 0.34 -1.3 497,399 + Pf1N1B4_6033 0.45 -0.9 497,400 - -1.3 497,480 - Pf1N1B4_6033 0.53 -1.5 497,480 - Pf1N1B4_6033 0.53 +0.1 497,507 - Pf1N1B4_6033 0.56 -0.9 497,878 + -0.9 497,879 - -0.5 497,879 - -1.7 497,879 - -0.9 497,879 - -0.5 497,907 - -2.3 497,930 + -3.2 497,931 - -1.9 497,931 - -2.8 497,931 - -3.6
Or see this region's nucleotide sequence