Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_590

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_589 and Pf1N1B4_590 are separated by 219 nucleotidesPf1N1B4_590 and Pf1N1B4_591 are separated by 108 nucleotides Pf1N1B4_589 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 679,222 to 680,691 _589 Pf1N1B4_590 - Phosphogluconate repressor HexR, RpiR family, at 680,911 to 681,780 _590 Pf1N1B4_591 - Aldose 1-epimerase, at 681,889 to 682,758 _591 Position (kb) 680 681 682Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 680.726 kb on - strandat 680.869 kb on + strandat 680.881 kb on + strandat 680.882 kb on - strandat 680.882 kb on - strandat 680.882 kb on - strandat 680.882 kb on - strandat 680.898 kb on + strandat 680.899 kb on - strandat 681.160 kb on + strand, within Pf1N1B4_590at 681.160 kb on + strand, within Pf1N1B4_590at 681.160 kb on + strandat 681.161 kb on - strand, within Pf1N1B4_590at 681.161 kb on - strand, within Pf1N1B4_590at 681.161 kb on - strand, within Pf1N1B4_590at 681.202 kb on + strand, within Pf1N1B4_590at 681.203 kb on - strand, within Pf1N1B4_590at 681.203 kb on - strand, within Pf1N1B4_590at 681.204 kb on + strand, within Pf1N1B4_590at 681.618 kb on + strand, within Pf1N1B4_590at 681.618 kb on + strand, within Pf1N1B4_590at 681.619 kb on - strand, within Pf1N1B4_590at 681.619 kb on - strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strandat 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strandat 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strandat 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.622 kb on + strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.623 kb on - strand, within Pf1N1B4_590at 681.624 kb on + strand, within Pf1N1B4_590at 681.624 kb on + strand, within Pf1N1B4_590at 681.624 kb on + strand, within Pf1N1B4_590at 681.625 kb on - strand, within Pf1N1B4_590at 681.774 kb on + strandat 681.774 kb on + strandat 681.774 kb on + strandat 681.774 kb on + strandat 681.775 kb on - strandat 681.778 kb on + strandat 681.779 kb on - strandat 682.007 kb on - strand, within Pf1N1B4_591at 682.007 kb on - strandat 682.269 kb on + strand, within Pf1N1B4_591at 682.269 kb on + strand, within Pf1N1B4_591at 682.396 kb on + strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.397 kb on - strand, within Pf1N1B4_591at 682.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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680,726 - +0.0
680,869 + +1.3
680,881 + -1.7
680,882 - -3.3
680,882 - -1.0
680,882 - -1.0
680,882 - -1.5
680,898 + +0.9
680,899 - -0.7
681,160 + Pf1N1B4_590 0.29 -1.5
681,160 + Pf1N1B4_590 0.29 -0.5
681,160 + +0.3
681,161 - Pf1N1B4_590 0.29 +0.1
681,161 - Pf1N1B4_590 0.29 -0.3
681,161 - Pf1N1B4_590 0.29 -1.3
681,202 + Pf1N1B4_590 0.33 -0.7
681,203 - Pf1N1B4_590 0.34 -0.8
681,203 - Pf1N1B4_590 0.34 +0.5
681,204 + Pf1N1B4_590 0.34 -1.3
681,618 + Pf1N1B4_590 0.81 +1.3
681,618 + Pf1N1B4_590 0.81 -1.4
681,619 - Pf1N1B4_590 0.81 -0.0
681,619 - Pf1N1B4_590 0.81 -0.5
681,622 + Pf1N1B4_590 0.82 -0.9
681,622 + Pf1N1B4_590 0.82 -1.8
681,622 + Pf1N1B4_590 0.82 -0.2
681,622 + Pf1N1B4_590 0.82 -1.9
681,622 + +0.3
681,622 + Pf1N1B4_590 0.82 -2.0
681,622 + Pf1N1B4_590 0.82 +0.7
681,622 + Pf1N1B4_590 0.82 -2.2
681,622 + Pf1N1B4_590 0.82 -0.7
681,622 + Pf1N1B4_590 0.82 +0.3
681,622 + -0.7
681,622 + Pf1N1B4_590 0.82 -1.0
681,622 + Pf1N1B4_590 0.82 -0.3
681,622 + Pf1N1B4_590 0.82 -0.5
681,622 + Pf1N1B4_590 0.82 -0.0
681,622 + Pf1N1B4_590 0.82 +0.3
681,622 + Pf1N1B4_590 0.82 +1.7
681,622 + Pf1N1B4_590 0.82 -2.4
681,622 + +0.7
681,622 + Pf1N1B4_590 0.82 -1.7
681,622 + Pf1N1B4_590 0.82 -0.5
681,622 + Pf1N1B4_590 0.82 -1.3
681,622 + Pf1N1B4_590 0.82 -0.5
681,622 + Pf1N1B4_590 0.82 -0.4
681,622 + Pf1N1B4_590 0.82 +0.3
681,622 + Pf1N1B4_590 0.82 +0.4
681,623 - Pf1N1B4_590 0.82 +0.3
681,623 - Pf1N1B4_590 0.82 -2.2
681,623 - Pf1N1B4_590 0.82 +0.6
681,623 - Pf1N1B4_590 0.82 +0.3
681,623 - Pf1N1B4_590 0.82 +0.8
681,623 - Pf1N1B4_590 0.82 -1.9
681,623 - Pf1N1B4_590 0.82 -1.3
681,623 - Pf1N1B4_590 0.82 -1.0
681,623 - Pf1N1B4_590 0.82 -0.1
681,623 - Pf1N1B4_590 0.82 -1.7
681,623 - Pf1N1B4_590 0.82 -1.5
681,623 - Pf1N1B4_590 0.82 -2.5
681,623 - Pf1N1B4_590 0.82 -1.3
681,623 - Pf1N1B4_590 0.82 +0.3
681,623 - Pf1N1B4_590 0.82 +0.2
681,623 - Pf1N1B4_590 0.82 -0.4
681,623 - Pf1N1B4_590 0.82 +0.7
681,623 - Pf1N1B4_590 0.82 -1.3
681,623 - Pf1N1B4_590 0.82 -2.2
681,623 - Pf1N1B4_590 0.82 +0.3
681,623 - Pf1N1B4_590 0.82 -0.0
681,623 - Pf1N1B4_590 0.82 +0.3
681,623 - Pf1N1B4_590 0.82 -2.4
681,623 - Pf1N1B4_590 0.82 -0.0
681,623 - Pf1N1B4_590 0.82 -1.3
681,623 - Pf1N1B4_590 0.82 -1.3
681,623 - Pf1N1B4_590 0.82 -0.3
681,623 - Pf1N1B4_590 0.82 -0.5
681,623 - Pf1N1B4_590 0.82 -1.0
681,623 - Pf1N1B4_590 0.82 -0.3
681,623 - Pf1N1B4_590 0.82 +1.3
681,623 - Pf1N1B4_590 0.82 +0.0
681,623 - Pf1N1B4_590 0.82 -1.4
681,623 - Pf1N1B4_590 0.82 -0.3
681,623 - Pf1N1B4_590 0.82 +0.3
681,623 - Pf1N1B4_590 0.82 -3.2
681,623 - Pf1N1B4_590 0.82 -0.5
681,623 - Pf1N1B4_590 0.82 -0.3
681,624 + Pf1N1B4_590 0.82 +1.3
681,624 + Pf1N1B4_590 0.82 -1.3
681,624 + Pf1N1B4_590 0.82 -0.7
681,625 - Pf1N1B4_590 0.82 -1.5
681,774 + -1.0
681,774 + +0.4
681,774 + +0.7
681,774 + +1.3
681,775 - +2.0
681,778 + -0.6
681,779 - +0.3
682,007 - Pf1N1B4_591 0.14 -0.3
682,007 - +0.7
682,269 + Pf1N1B4_591 0.44 +0.3
682,269 + Pf1N1B4_591 0.44 -0.3
682,396 + Pf1N1B4_591 0.58 +0.5
682,397 - Pf1N1B4_591 0.58 -0.8
682,397 - Pf1N1B4_591 0.58 +0.7
682,397 - Pf1N1B4_591 0.58 -0.0
682,397 - Pf1N1B4_591 0.58 +1.1
682,397 - Pf1N1B4_591 0.58 -1.5
682,742 - +1.8

Or see this region's nucleotide sequence