Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4920 and Pf1N1B4_4921 are separated by 466 nucleotides Pf1N1B4_4921 and Pf1N1B4_4922 are separated by 43 nucleotides
Pf1N1B4_4920 - Aldehyde dehydrogenase (EC 1.2.1.3), at 5,451,574 to 5,453,046
_4920
Pf1N1B4_4921 - Haloacid dehalogenase, type II, at 5,453,513 to 5,454,181
_4921
Pf1N1B4_4922 - Opine oxidase subunit B, at 5,454,225 to 5,455,499
_4922
Position (kb) 5453
5454
5455 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5452.519 kb on + strand, within Pf1N1B4_4920 at 5452.687 kb on + strand, within Pf1N1B4_4920 at 5452.688 kb on - strand, within Pf1N1B4_4920 at 5452.934 kb on - strand at 5453.288 kb on - strand at 5453.419 kb on + strand at 5453.420 kb on - strand at 5453.772 kb on - strand, within Pf1N1B4_4921 at 5453.774 kb on + strand, within Pf1N1B4_4921 at 5453.775 kb on - strand, within Pf1N1B4_4921 at 5454.041 kb on + strand, within Pf1N1B4_4921 at 5454.125 kb on + strand at 5454.125 kb on + strand at 5454.125 kb on + strand at 5454.125 kb on + strand at 5454.125 kb on + strand at 5454.125 kb on + strand at 5454.125 kb on + strand at 5454.126 kb on - strand at 5454.126 kb on - strand at 5454.126 kb on - strand at 5454.126 kb on - strand at 5454.220 kb on + strand at 5454.459 kb on + strand, within Pf1N1B4_4922 at 5454.460 kb on - strand at 5454.504 kb on + strand, within Pf1N1B4_4922 at 5454.826 kb on - strand, within Pf1N1B4_4922 at 5454.913 kb on + strand, within Pf1N1B4_4922 at 5454.913 kb on + strand, within Pf1N1B4_4922 at 5454.914 kb on - strand, within Pf1N1B4_4922 at 5454.914 kb on - strand, within Pf1N1B4_4922 at 5454.914 kb on - strand, within Pf1N1B4_4922 at 5454.914 kb on - strand, within Pf1N1B4_4922 at 5455.053 kb on + strand, within Pf1N1B4_4922 at 5455.053 kb on + strand, within Pf1N1B4_4922 at 5455.053 kb on + strand, within Pf1N1B4_4922 at 5455.054 kb on - strand, within Pf1N1B4_4922 at 5455.054 kb on - strand, within Pf1N1B4_4922 at 5455.054 kb on - strand, within Pf1N1B4_4922 at 5455.054 kb on - strand, within Pf1N1B4_4922 at 5455.054 kb on - strand at 5455.054 kb on - strand at 5455.054 kb on - strand, within Pf1N1B4_4922 at 5455.080 kb on + strand, within Pf1N1B4_4922 at 5455.080 kb on + strand, within Pf1N1B4_4922 at 5455.080 kb on + strand, within Pf1N1B4_4922 at 5455.080 kb on + strand, within Pf1N1B4_4922 at 5455.080 kb on + strand, within Pf1N1B4_4922 at 5455.081 kb on - strand, within Pf1N1B4_4922
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 5,452,519 + Pf1N1B4_4920 0.64 -0.1 5,452,687 + Pf1N1B4_4920 0.76 -0.1 5,452,688 - Pf1N1B4_4920 0.76 -1.4 5,452,934 - +1.1 5,453,288 - +0.1 5,453,419 + -0.3 5,453,420 - -1.5 5,453,772 - Pf1N1B4_4921 0.39 -1.7 5,453,774 + Pf1N1B4_4921 0.39 -0.4 5,453,775 - Pf1N1B4_4921 0.39 -1.1 5,454,041 + Pf1N1B4_4921 0.79 -0.6 5,454,125 + +0.4 5,454,125 + +0.1 5,454,125 + -0.4 5,454,125 + -0.1 5,454,125 + +0.4 5,454,125 + +0.4 5,454,125 + +1.8 5,454,126 - -0.1 5,454,126 - -0.5 5,454,126 - -1.1 5,454,126 - +0.3 5,454,220 + -1.9 5,454,459 + Pf1N1B4_4922 0.18 -0.7 5,454,460 - -1.1 5,454,504 + Pf1N1B4_4922 0.22 -0.5 5,454,826 - Pf1N1B4_4922 0.47 +1.2 5,454,913 + Pf1N1B4_4922 0.54 -0.7 5,454,913 + Pf1N1B4_4922 0.54 +1.4 5,454,914 - Pf1N1B4_4922 0.54 +0.7 5,454,914 - Pf1N1B4_4922 0.54 -0.1 5,454,914 - Pf1N1B4_4922 0.54 +0.1 5,454,914 - Pf1N1B4_4922 0.54 +2.0 5,455,053 + Pf1N1B4_4922 0.65 -2.3 5,455,053 + Pf1N1B4_4922 0.65 +1.1 5,455,053 + Pf1N1B4_4922 0.65 +1.3 5,455,054 - Pf1N1B4_4922 0.65 -0.1 5,455,054 - Pf1N1B4_4922 0.65 -0.7 5,455,054 - Pf1N1B4_4922 0.65 -0.7 5,455,054 - Pf1N1B4_4922 0.65 -2.3 5,455,054 - +0.9 5,455,054 - +0.9 5,455,054 - Pf1N1B4_4922 0.65 -0.6 5,455,080 + Pf1N1B4_4922 0.67 -0.0 5,455,080 + Pf1N1B4_4922 0.67 +0.9 5,455,080 + Pf1N1B4_4922 0.67 +0.5 5,455,080 + Pf1N1B4_4922 0.67 -0.1 5,455,080 + Pf1N1B4_4922 0.67 +0.9 5,455,081 - Pf1N1B4_4922 0.67 -0.2
Or see this region's nucleotide sequence