Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4917 and Pf1N1B4_4918 are separated by 112 nucleotides Pf1N1B4_4918 and Pf1N1B4_4919 are separated by 69 nucleotides
Pf1N1B4_4917 - Conserved protein containing metal-dependent amidohydrolase family domain, at 5,448,063 to 5,449,580
_4917
Pf1N1B4_4918 - Predicted enzyme of the cupin superfamily, at 5,449,693 to 5,450,406
_4918
Pf1N1B4_4919 - Histone acetyltransferase HPA2 and related acetyltransferases, at 5,450,476 to 5,451,333
_4919
Position (kb) 5449
5450
5451 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5449.064 kb on + strand, within Pf1N1B4_4917 at 5449.572 kb on + strand at 5449.601 kb on + strand at 5449.671 kb on + strand at 5449.671 kb on + strand at 5449.694 kb on + strand at 5449.706 kb on + strand at 5449.721 kb on + strand at 5449.721 kb on + strand at 5449.789 kb on + strand, within Pf1N1B4_4918 at 5449.789 kb on + strand, within Pf1N1B4_4918 at 5449.959 kb on + strand at 5449.972 kb on + strand, within Pf1N1B4_4918 at 5450.186 kb on + strand, within Pf1N1B4_4918 at 5450.186 kb on + strand at 5450.187 kb on - strand, within Pf1N1B4_4918 at 5450.358 kb on + strand at 5450.406 kb on + strand at 5450.406 kb on + strand at 5450.406 kb on + strand at 5450.435 kb on + strand at 5450.436 kb on - strand at 5450.436 kb on - strand at 5450.436 kb on - strand at 5450.993 kb on + strand at 5451.095 kb on + strand, within Pf1N1B4_4919 at 5451.308 kb on + strand at 5451.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 5,449,064 + Pf1N1B4_4917 0.66 +0.0 5,449,572 + +0.4 5,449,601 + +2.9 5,449,671 + +1.9 5,449,671 + -1.1 5,449,694 + -1.1 5,449,706 + -0.2 5,449,721 + -0.3 5,449,721 + +0.1 5,449,789 + Pf1N1B4_4918 0.13 -1.3 5,449,789 + Pf1N1B4_4918 0.13 -1.5 5,449,959 + +0.3 5,449,972 + Pf1N1B4_4918 0.39 -2.0 5,450,186 + Pf1N1B4_4918 0.69 +0.9 5,450,186 + +1.9 5,450,187 - Pf1N1B4_4918 0.69 -1.0 5,450,358 + -1.0 5,450,406 + -0.7 5,450,406 + -2.3 5,450,406 + -0.6 5,450,435 + +0.4 5,450,436 - -0.5 5,450,436 - +0.4 5,450,436 - +0.9 5,450,993 + -1.1 5,451,095 + Pf1N1B4_4919 0.72 +1.4 5,451,308 + +0.3 5,451,309 - -0.1
Or see this region's nucleotide sequence