Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4853

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4853 and Pf1N1B4_4854 are separated by 469 nucleotides Pf1N1B4_4853 - Glycosyltransferase, at 5,362,715 to 5,363,923 _4853 Pf1N1B4_4854 - hypothetical protein, at 5,364,393 to 5,366,735 _4854 Position (kb) 5362 5363 5364Strain fitness (log2 ratio) -1 0 1 2at 5362.310 kb on + strandat 5362.403 kb on + strandat 5362.670 kb on + strandat 5362.768 kb on + strandat 5362.840 kb on - strand, within Pf1N1B4_4853at 5362.871 kb on + strand, within Pf1N1B4_4853at 5362.872 kb on - strand, within Pf1N1B4_4853at 5362.872 kb on - strand, within Pf1N1B4_4853at 5362.872 kb on - strand, within Pf1N1B4_4853at 5362.948 kb on - strand, within Pf1N1B4_4853at 5363.227 kb on - strand, within Pf1N1B4_4853at 5363.576 kb on + strand, within Pf1N1B4_4853at 5363.797 kb on + strand, within Pf1N1B4_4853at 5363.968 kb on - strandat 5364.054 kb on + strandat 5364.212 kb on + strandat 5364.294 kb on + strandat 5364.417 kb on + strandat 5364.448 kb on + strandat 5364.448 kb on + strandat 5364.448 kb on + strandat 5364.467 kb on - strandat 5364.771 kb on - strand, within Pf1N1B4_4854at 5364.892 kb on - strand, within Pf1N1B4_4854

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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5,362,310 + +0.2
5,362,403 + -0.3
5,362,670 + -0.0
5,362,768 + -0.2
5,362,840 - Pf1N1B4_4853 0.10 -0.2
5,362,871 + Pf1N1B4_4853 0.13 -1.2
5,362,872 - Pf1N1B4_4853 0.13 -0.5
5,362,872 - Pf1N1B4_4853 0.13 -1.5
5,362,872 - Pf1N1B4_4853 0.13 -0.3
5,362,948 - Pf1N1B4_4853 0.19 -0.8
5,363,227 - Pf1N1B4_4853 0.42 -0.4
5,363,576 + Pf1N1B4_4853 0.71 -0.6
5,363,797 + Pf1N1B4_4853 0.89 -0.8
5,363,968 - +0.4
5,364,054 + -0.2
5,364,212 + +1.8
5,364,294 + +0.8
5,364,417 + -0.3
5,364,448 + -0.5
5,364,448 + +0.5
5,364,448 + +0.3
5,364,467 - -0.0
5,364,771 - Pf1N1B4_4854 0.16 +1.7
5,364,892 - Pf1N1B4_4854 0.21 +0.8

Or see this region's nucleotide sequence