Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4759 and Pf1N1B4_4760 are separated by 391 nucleotides Pf1N1B4_4760 and Pf1N1B4_4761 overlap by 4 nucleotides Pf1N1B4_4761 and Pf1N1B4_4762 are separated by 64 nucleotides Pf1N1B4_4762 and Pf1N1B4_4763 are separated by 125 nucleotides
Pf1N1B4_4759 - Proteinase inhibitor I11, ecotin precursor, at 5,257,201 to 5,257,683
_4759
Pf1N1B4_4760 - FIG00962118: hypothetical protein, at 5,258,075 to 5,258,344
_4760
Pf1N1B4_4761 - hypothetical protein, at 5,258,341 to 5,258,739
_4761
Pf1N1B4_4762 - hypothetical protein, at 5,258,804 to 5,259,070
_4762
Pf1N1B4_4763 - 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43), at 5,259,196 to 5,260,221
_4763
Position (kb)
5258
5259 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5257.645 kb on + strand at 5257.901 kb on + strand at 5258.097 kb on + strand at 5258.180 kb on + strand, within Pf1N1B4_4760 at 5258.226 kb on + strand at 5258.503 kb on - strand, within Pf1N1B4_4761 at 5258.503 kb on - strand, within Pf1N1B4_4761 at 5258.558 kb on + strand, within Pf1N1B4_4761 at 5258.800 kb on - strand at 5258.814 kb on + strand at 5258.815 kb on - strand at 5258.815 kb on - strand at 5258.815 kb on - strand at 5258.815 kb on - strand at 5258.815 kb on - strand at 5258.818 kb on + strand at 5258.819 kb on - strand at 5258.842 kb on - strand, within Pf1N1B4_4762 at 5258.845 kb on + strand, within Pf1N1B4_4762 at 5258.846 kb on - strand, within Pf1N1B4_4762 at 5258.877 kb on + strand, within Pf1N1B4_4762 at 5258.877 kb on + strand, within Pf1N1B4_4762 at 5258.878 kb on - strand, within Pf1N1B4_4762 at 5258.878 kb on - strand, within Pf1N1B4_4762 at 5258.965 kb on - strand, within Pf1N1B4_4762 at 5259.208 kb on + strand at 5259.313 kb on - strand, within Pf1N1B4_4763 at 5259.702 kb on - strand, within Pf1N1B4_4763
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 5,257,645 + +0.5 5,257,901 + +0.2 5,258,097 + -0.3 5,258,180 + Pf1N1B4_4760 0.39 +0.1 5,258,226 + +1.9 5,258,503 - Pf1N1B4_4761 0.41 -1.4 5,258,503 - Pf1N1B4_4761 0.41 -0.7 5,258,558 + Pf1N1B4_4761 0.54 -0.5 5,258,800 - -0.5 5,258,814 + -1.1 5,258,815 - -1.8 5,258,815 - +0.3 5,258,815 - -0.8 5,258,815 - +0.9 5,258,815 - -0.7 5,258,818 + -1.0 5,258,819 - +0.4 5,258,842 - Pf1N1B4_4762 0.14 +0.6 5,258,845 + Pf1N1B4_4762 0.15 +1.0 5,258,846 - Pf1N1B4_4762 0.16 +0.4 5,258,877 + Pf1N1B4_4762 0.27 -0.1 5,258,877 + Pf1N1B4_4762 0.27 -0.3 5,258,878 - Pf1N1B4_4762 0.28 +0.7 5,258,878 - Pf1N1B4_4762 0.28 -0.6 5,258,965 - Pf1N1B4_4762 0.60 -0.9 5,259,208 + +0.3 5,259,313 - Pf1N1B4_4763 0.11 -0.8 5,259,702 - Pf1N1B4_4763 0.49 +0.5
Or see this region's nucleotide sequence