Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4276

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4275 and Pf1N1B4_4276 overlap by 4 nucleotidesPf1N1B4_4276 and Pf1N1B4_4277 are separated by 44 nucleotides Pf1N1B4_4275 - Inosose dehydratase (EC 4.2.1.44), at 4,740,508 to 4,741,401 _4275 Pf1N1B4_4276 - 5-deoxy-glucuronate isomerase (EC 5.3.1.-), at 4,741,398 to 4,742,207 _4276 Pf1N1B4_4277 - Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27), at 4,742,252 to 4,743,754 _4277 Position (kb) 4741 4742 4743Strain fitness (log2 ratio) -2 -1 0 1 2at 4740.411 kb on + strandat 4740.411 kb on + strandat 4740.411 kb on + strandat 4740.411 kb on + strandat 4740.411 kb on + strandat 4740.425 kb on - strandat 4740.494 kb on + strandat 4740.691 kb on + strand, within Pf1N1B4_4275at 4740.786 kb on - strand, within Pf1N1B4_4275at 4740.965 kb on - strand, within Pf1N1B4_4275at 4741.069 kb on + strand, within Pf1N1B4_4275at 4741.069 kb on + strand, within Pf1N1B4_4275at 4741.070 kb on - strand, within Pf1N1B4_4275at 4741.070 kb on - strandat 4741.070 kb on - strand, within Pf1N1B4_4275at 4741.336 kb on + strandat 4741.467 kb on + strandat 4741.468 kb on - strandat 4741.468 kb on - strandat 4741.662 kb on + strand, within Pf1N1B4_4276at 4741.822 kb on - strandat 4741.908 kb on + strand, within Pf1N1B4_4276at 4741.968 kb on + strand, within Pf1N1B4_4276at 4741.968 kb on + strand, within Pf1N1B4_4276at 4741.968 kb on + strand, within Pf1N1B4_4276at 4741.968 kb on + strand, within Pf1N1B4_4276at 4741.968 kb on + strand, within Pf1N1B4_4276at 4741.969 kb on - strand, within Pf1N1B4_4276at 4741.969 kb on - strandat 4741.971 kb on + strand, within Pf1N1B4_4276at 4742.124 kb on + strand, within Pf1N1B4_4276at 4742.124 kb on + strand, within Pf1N1B4_4276at 4742.125 kb on - strand, within Pf1N1B4_4276at 4742.127 kb on + strandat 4742.280 kb on - strandat 4742.295 kb on + strandat 4742.295 kb on + strandat 4742.824 kb on - strand, within Pf1N1B4_4277at 4742.862 kb on + strand, within Pf1N1B4_4277at 4742.862 kb on + strand, within Pf1N1B4_4277at 4742.862 kb on + strand, within Pf1N1B4_4277at 4742.863 kb on - strandat 4742.954 kb on + strand, within Pf1N1B4_4277at 4742.991 kb on + strand, within Pf1N1B4_4277at 4743.019 kb on + strand, within Pf1N1B4_4277at 4743.019 kb on + strand, within Pf1N1B4_4277at 4743.019 kb on + strand, within Pf1N1B4_4277at 4743.019 kb on + strand, within Pf1N1B4_4277at 4743.019 kb on + strand, within Pf1N1B4_4277

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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4,740,411 + -0.6
4,740,411 + +0.3
4,740,411 + -0.0
4,740,411 + -0.6
4,740,411 + -1.6
4,740,425 - +0.3
4,740,494 + +0.6
4,740,691 + Pf1N1B4_4275 0.20 +1.3
4,740,786 - Pf1N1B4_4275 0.31 +0.4
4,740,965 - Pf1N1B4_4275 0.51 +0.1
4,741,069 + Pf1N1B4_4275 0.63 +0.4
4,741,069 + Pf1N1B4_4275 0.63 +1.1
4,741,070 - Pf1N1B4_4275 0.63 -1.2
4,741,070 - -0.0
4,741,070 - Pf1N1B4_4275 0.63 -0.3
4,741,336 + -0.6
4,741,467 + -0.8
4,741,468 - -0.0
4,741,468 - -0.0
4,741,662 + Pf1N1B4_4276 0.33 -0.7
4,741,822 - -0.0
4,741,908 + Pf1N1B4_4276 0.63 -2.6
4,741,968 + Pf1N1B4_4276 0.70 -0.9
4,741,968 + Pf1N1B4_4276 0.70 +0.3
4,741,968 + Pf1N1B4_4276 0.70 -1.0
4,741,968 + Pf1N1B4_4276 0.70 -1.6
4,741,968 + Pf1N1B4_4276 0.70 -1.6
4,741,969 - Pf1N1B4_4276 0.70 -0.3
4,741,969 - +2.0
4,741,971 + Pf1N1B4_4276 0.71 -0.1
4,742,124 + Pf1N1B4_4276 0.90 -0.5
4,742,124 + Pf1N1B4_4276 0.90 -1.4
4,742,125 - Pf1N1B4_4276 0.90 -0.2
4,742,127 + -0.3
4,742,280 - +1.3
4,742,295 + +0.4
4,742,295 + -0.2
4,742,824 - Pf1N1B4_4277 0.38 -0.6
4,742,862 + Pf1N1B4_4277 0.41 +0.1
4,742,862 + Pf1N1B4_4277 0.41 +0.3
4,742,862 + Pf1N1B4_4277 0.41 +0.4
4,742,863 - +0.3
4,742,954 + Pf1N1B4_4277 0.47 +0.8
4,742,991 + Pf1N1B4_4277 0.49 +2.0
4,743,019 + Pf1N1B4_4277 0.51 -0.5
4,743,019 + Pf1N1B4_4277 0.51 -0.6
4,743,019 + Pf1N1B4_4277 0.51 -1.6
4,743,019 + Pf1N1B4_4277 0.51 +0.3
4,743,019 + Pf1N1B4_4277 0.51 +1.7

Or see this region's nucleotide sequence