Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_325 and Pf1N1B4_326 are separated by 443 nucleotides Pf1N1B4_326 and Pf1N1B4_327 are separated by 2 nucleotides
Pf1N1B4_325 - D amino acid oxidase (DAO) family (EC 1.4.3.3), at 383,627 to 384,769
_325
Pf1N1B4_326 - Glycosyl transferase, family 2:GtrA-like protein, at 385,213 to 385,503
_326
Pf1N1B4_327 - hypothetical protein, at 385,506 to 386,450
_327
Position (kb) 385
386 Strain fitness (log2 ratio) -2
-1
0
1
2 at 384.216 kb on + strand, within Pf1N1B4_325 at 384.216 kb on + strand, within Pf1N1B4_325 at 384.216 kb on + strand, within Pf1N1B4_325 at 384.216 kb on + strand, within Pf1N1B4_325 at 384.216 kb on + strand at 384.217 kb on - strand, within Pf1N1B4_325 at 384.217 kb on - strand, within Pf1N1B4_325 at 384.220 kb on + strand, within Pf1N1B4_325 at 384.220 kb on + strand, within Pf1N1B4_325 at 384.220 kb on + strand, within Pf1N1B4_325 at 384.221 kb on - strand, within Pf1N1B4_325 at 384.221 kb on - strand, within Pf1N1B4_325 at 384.221 kb on - strand, within Pf1N1B4_325 at 384.226 kb on + strand, within Pf1N1B4_325 at 384.226 kb on + strand, within Pf1N1B4_325 at 384.230 kb on + strand, within Pf1N1B4_325 at 384.230 kb on + strand, within Pf1N1B4_325 at 384.230 kb on + strand, within Pf1N1B4_325 at 384.230 kb on + strand, within Pf1N1B4_325 at 384.230 kb on + strand, within Pf1N1B4_325 at 384.230 kb on + strand, within Pf1N1B4_325 at 384.231 kb on - strand, within Pf1N1B4_325 at 384.231 kb on - strand, within Pf1N1B4_325 at 384.231 kb on - strand, within Pf1N1B4_325 at 384.231 kb on - strand, within Pf1N1B4_325 at 384.231 kb on - strand, within Pf1N1B4_325 at 384.418 kb on - strand, within Pf1N1B4_325 at 384.418 kb on - strand, within Pf1N1B4_325 at 384.418 kb on - strand, within Pf1N1B4_325 at 384.423 kb on - strand at 384.424 kb on + strand, within Pf1N1B4_325 at 384.424 kb on + strand, within Pf1N1B4_325 at 384.424 kb on + strand, within Pf1N1B4_325 at 384.424 kb on + strand, within Pf1N1B4_325 at 384.424 kb on + strand, within Pf1N1B4_325 at 384.424 kb on + strand, within Pf1N1B4_325 at 384.424 kb on + strand, within Pf1N1B4_325 at 384.424 kb on + strand, within Pf1N1B4_325 at 384.424 kb on + strand at 384.425 kb on - strand at 384.425 kb on - strand, within Pf1N1B4_325 at 384.425 kb on - strand, within Pf1N1B4_325 at 384.433 kb on + strand, within Pf1N1B4_325 at 384.434 kb on - strand, within Pf1N1B4_325 at 384.434 kb on - strand, within Pf1N1B4_325 at 384.434 kb on - strand, within Pf1N1B4_325 at 384.485 kb on + strand, within Pf1N1B4_325 at 384.486 kb on - strand, within Pf1N1B4_325 at 384.525 kb on + strand, within Pf1N1B4_325 at 384.525 kb on + strand, within Pf1N1B4_325 at 384.525 kb on + strand, within Pf1N1B4_325 at 384.525 kb on + strand, within Pf1N1B4_325 at 384.525 kb on + strand, within Pf1N1B4_325 at 384.525 kb on + strand, within Pf1N1B4_325 at 384.525 kb on + strand, within Pf1N1B4_325 at 384.525 kb on + strand, within Pf1N1B4_325 at 384.526 kb on - strand, within Pf1N1B4_325 at 384.526 kb on - strand, within Pf1N1B4_325 at 384.526 kb on - strand, within Pf1N1B4_325 at 384.533 kb on + strand, within Pf1N1B4_325 at 384.533 kb on + strand, within Pf1N1B4_325 at 384.560 kb on + strand, within Pf1N1B4_325 at 384.560 kb on + strand, within Pf1N1B4_325 at 384.560 kb on + strand, within Pf1N1B4_325 at 384.561 kb on - strand, within Pf1N1B4_325 at 384.561 kb on - strand, within Pf1N1B4_325 at 384.564 kb on + strand, within Pf1N1B4_325 at 384.565 kb on - strand at 384.565 kb on - strand, within Pf1N1B4_325 at 384.596 kb on - strand, within Pf1N1B4_325 at 384.663 kb on - strand at 384.695 kb on + strand at 384.696 kb on - strand at 384.696 kb on - strand at 384.696 kb on - strand at 384.847 kb on + strand at 384.850 kb on - strand at 385.061 kb on + strand at 385.062 kb on - strand at 385.196 kb on + strand at 385.587 kb on + strand at 385.590 kb on - strand at 385.787 kb on - strand, within Pf1N1B4_327 at 385.787 kb on - strand, within Pf1N1B4_327 at 385.904 kb on - strand, within Pf1N1B4_327 at 385.904 kb on - strand, within Pf1N1B4_327
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 384,216 + Pf1N1B4_325 0.52 -0.2 384,216 + Pf1N1B4_325 0.52 -0.6 384,216 + Pf1N1B4_325 0.52 -0.7 384,216 + Pf1N1B4_325 0.52 -0.3 384,216 + +1.2 384,217 - Pf1N1B4_325 0.52 -1.0 384,217 - Pf1N1B4_325 0.52 -0.6 384,220 + Pf1N1B4_325 0.52 -0.2 384,220 + Pf1N1B4_325 0.52 +0.2 384,220 + Pf1N1B4_325 0.52 -0.8 384,221 - Pf1N1B4_325 0.52 -0.1 384,221 - Pf1N1B4_325 0.52 +1.0 384,221 - Pf1N1B4_325 0.52 +0.2 384,226 + Pf1N1B4_325 0.52 -0.3 384,226 + Pf1N1B4_325 0.52 -1.2 384,230 + Pf1N1B4_325 0.53 -1.8 384,230 + Pf1N1B4_325 0.53 +1.2 384,230 + Pf1N1B4_325 0.53 +0.2 384,230 + Pf1N1B4_325 0.53 -0.6 384,230 + Pf1N1B4_325 0.53 -0.8 384,230 + Pf1N1B4_325 0.53 +0.7 384,231 - Pf1N1B4_325 0.53 -1.6 384,231 - Pf1N1B4_325 0.53 -0.1 384,231 - Pf1N1B4_325 0.53 +0.8 384,231 - Pf1N1B4_325 0.53 -0.5 384,231 - Pf1N1B4_325 0.53 -0.4 384,418 - Pf1N1B4_325 0.69 -1.2 384,418 - Pf1N1B4_325 0.69 +2.7 384,418 - Pf1N1B4_325 0.69 -0.4 384,423 - +1.2 384,424 + Pf1N1B4_325 0.70 -1.3 384,424 + Pf1N1B4_325 0.70 -0.2 384,424 + Pf1N1B4_325 0.70 -0.8 384,424 + Pf1N1B4_325 0.70 +0.4 384,424 + Pf1N1B4_325 0.70 +0.3 384,424 + Pf1N1B4_325 0.70 +0.4 384,424 + Pf1N1B4_325 0.70 -0.8 384,424 + Pf1N1B4_325 0.70 -0.8 384,424 + +0.6 384,425 - +0.2 384,425 - Pf1N1B4_325 0.70 -1.2 384,425 - Pf1N1B4_325 0.70 +0.6 384,433 + Pf1N1B4_325 0.71 -2.0 384,434 - Pf1N1B4_325 0.71 -0.5 384,434 - Pf1N1B4_325 0.71 +0.1 384,434 - Pf1N1B4_325 0.71 -0.6 384,485 + Pf1N1B4_325 0.75 +0.4 384,486 - Pf1N1B4_325 0.75 -0.8 384,525 + Pf1N1B4_325 0.79 +1.0 384,525 + Pf1N1B4_325 0.79 -0.4 384,525 + Pf1N1B4_325 0.79 -0.8 384,525 + Pf1N1B4_325 0.79 +0.2 384,525 + Pf1N1B4_325 0.79 +1.4 384,525 + Pf1N1B4_325 0.79 -0.6 384,525 + Pf1N1B4_325 0.79 +1.2 384,525 + Pf1N1B4_325 0.79 +0.7 384,526 - Pf1N1B4_325 0.79 -0.6 384,526 - Pf1N1B4_325 0.79 +0.2 384,526 - Pf1N1B4_325 0.79 -0.6 384,533 + Pf1N1B4_325 0.79 -0.8 384,533 + Pf1N1B4_325 0.79 -0.3 384,560 + Pf1N1B4_325 0.82 -0.4 384,560 + Pf1N1B4_325 0.82 +0.7 384,560 + Pf1N1B4_325 0.82 -0.2 384,561 - Pf1N1B4_325 0.82 +1.2 384,561 - Pf1N1B4_325 0.82 -0.7 384,564 + Pf1N1B4_325 0.82 -0.8 384,565 - -0.4 384,565 - Pf1N1B4_325 0.82 -1.9 384,596 - Pf1N1B4_325 0.85 -0.8 384,663 - -1.8 384,695 + +0.9 384,696 - -2.0 384,696 - -2.0 384,696 - -0.2 384,847 + +0.9 384,850 - +1.2 385,061 + +0.8 385,062 - +2.2 385,196 + +1.2 385,587 + -0.6 385,590 - -0.7 385,787 - Pf1N1B4_327 0.30 -0.8 385,787 - Pf1N1B4_327 0.30 -1.6 385,904 - Pf1N1B4_327 0.42 -1.3 385,904 - Pf1N1B4_327 0.42 +0.7
Or see this region's nucleotide sequence