Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2735 and Pf1N1B4_2736 are separated by 78 nucleotides Pf1N1B4_2736 and Pf1N1B4_2737 are separated by 117 nucleotides
Pf1N1B4_2735 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,073,276 to 3,074,202
_2735
Pf1N1B4_2736 - ATP-dependent RNA helicase PA3950, at 3,074,281 to 3,075,615
_2736
Pf1N1B4_2737 - NAD(FAD)-utilizing dehydrogenases, at 3,075,733 to 3,077,010
_2737
Position (kb)
3074
3075
3076 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.435 kb on + strand, within Pf1N1B4_2735 at 3073.608 kb on + strand, within Pf1N1B4_2735 at 3073.609 kb on - strand, within Pf1N1B4_2735 at 3073.641 kb on + strand, within Pf1N1B4_2735 at 3073.645 kb on - strand, within Pf1N1B4_2735 at 3073.931 kb on - strand, within Pf1N1B4_2735 at 3073.931 kb on - strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.970 kb on - strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3074.014 kb on + strand, within Pf1N1B4_2735 at 3074.014 kb on + strand, within Pf1N1B4_2735 at 3074.015 kb on - strand, within Pf1N1B4_2735 at 3074.015 kb on - strand, within Pf1N1B4_2735 at 3074.021 kb on - strand, within Pf1N1B4_2735 at 3074.021 kb on - strand, within Pf1N1B4_2735 at 3074.080 kb on - strand, within Pf1N1B4_2735 at 3074.596 kb on + strand, within Pf1N1B4_2736 at 3074.606 kb on - strand, within Pf1N1B4_2736 at 3074.606 kb on - strand, within Pf1N1B4_2736 at 3074.970 kb on + strand, within Pf1N1B4_2736 at 3075.177 kb on - strand, within Pf1N1B4_2736 at 3075.263 kb on - strand, within Pf1N1B4_2736 at 3075.263 kb on - strand, within Pf1N1B4_2736 at 3075.570 kb on + strand at 3075.585 kb on + strand at 3075.600 kb on + strand at 3075.606 kb on + strand at 3075.606 kb on + strand at 3075.606 kb on + strand at 3075.606 kb on + strand at 3075.865 kb on + strand, within Pf1N1B4_2737 at 3075.865 kb on + strand, within Pf1N1B4_2737 at 3075.865 kb on + strand, within Pf1N1B4_2737 at 3075.865 kb on + strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3076.006 kb on - strand, within Pf1N1B4_2737 at 3076.064 kb on - strand, within Pf1N1B4_2737 at 3076.064 kb on - strand, within Pf1N1B4_2737 at 3076.064 kb on - strand, within Pf1N1B4_2737 at 3076.114 kb on + strand, within Pf1N1B4_2737 at 3076.131 kb on + strand, within Pf1N1B4_2737 at 3076.132 kb on - strand, within Pf1N1B4_2737 at 3076.220 kb on + strand, within Pf1N1B4_2737 at 3076.220 kb on + strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.399 kb on + strand, within Pf1N1B4_2737 at 3076.400 kb on - strand, within Pf1N1B4_2737 at 3076.400 kb on - strand, within Pf1N1B4_2737 at 3076.400 kb on - strand, within Pf1N1B4_2737 at 3076.576 kb on - strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.580 kb on - strand, within Pf1N1B4_2737 at 3076.580 kb on - strand, within Pf1N1B4_2737 at 3076.580 kb on - strand, within Pf1N1B4_2737 at 3076.580 kb on - strand, within Pf1N1B4_2737
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 3,073,330 + +0.5 3,073,330 + -1.9 3,073,330 + +0.1 3,073,330 + +1.1 3,073,330 + -0.5 3,073,331 - +1.0 3,073,331 - +1.9 3,073,331 - -2.3 3,073,331 - +0.2 3,073,351 + -0.3 3,073,351 + -0.5 3,073,351 + -0.1 3,073,351 + +1.3 3,073,351 + -0.6 3,073,351 + -0.8 3,073,435 + Pf1N1B4_2735 0.17 -0.2 3,073,608 + Pf1N1B4_2735 0.36 -0.5 3,073,609 - Pf1N1B4_2735 0.36 +0.3 3,073,641 + Pf1N1B4_2735 0.39 -1.6 3,073,645 - Pf1N1B4_2735 0.40 -1.1 3,073,931 - Pf1N1B4_2735 0.71 +1.1 3,073,931 - Pf1N1B4_2735 0.71 -0.3 3,073,969 + Pf1N1B4_2735 0.75 +0.2 3,073,969 + Pf1N1B4_2735 0.75 -0.6 3,073,969 + Pf1N1B4_2735 0.75 +0.7 3,073,969 + Pf1N1B4_2735 0.75 +1.5 3,073,970 - Pf1N1B4_2735 0.75 +0.7 3,073,975 + Pf1N1B4_2735 0.75 +0.7 3,073,975 + Pf1N1B4_2735 0.75 +0.1 3,073,975 + Pf1N1B4_2735 0.75 +1.5 3,073,975 + Pf1N1B4_2735 0.75 +1.5 3,073,975 + Pf1N1B4_2735 0.75 +0.5 3,073,976 - Pf1N1B4_2735 0.76 +0.6 3,073,976 - Pf1N1B4_2735 0.76 -1.1 3,073,976 - Pf1N1B4_2735 0.76 +0.5 3,073,976 - Pf1N1B4_2735 0.76 +0.3 3,073,976 - Pf1N1B4_2735 0.76 +1.1 3,073,976 - Pf1N1B4_2735 0.76 -0.1 3,073,976 - Pf1N1B4_2735 0.76 -0.1 3,073,976 - Pf1N1B4_2735 0.76 +0.7 3,073,976 - Pf1N1B4_2735 0.76 +0.4 3,073,976 - Pf1N1B4_2735 0.76 +0.1 3,073,976 - Pf1N1B4_2735 0.76 -0.1 3,074,014 + Pf1N1B4_2735 0.80 -1.1 3,074,014 + Pf1N1B4_2735 0.80 -0.6 3,074,015 - Pf1N1B4_2735 0.80 +0.7 3,074,015 - Pf1N1B4_2735 0.80 -0.1 3,074,021 - Pf1N1B4_2735 0.80 -0.1 3,074,021 - Pf1N1B4_2735 0.80 -0.1 3,074,080 - Pf1N1B4_2735 0.87 -1.9 3,074,596 + Pf1N1B4_2736 0.24 -1.4 3,074,606 - Pf1N1B4_2736 0.24 -0.5 3,074,606 - Pf1N1B4_2736 0.24 +0.5 3,074,970 + Pf1N1B4_2736 0.52 -1.3 3,075,177 - Pf1N1B4_2736 0.67 -0.1 3,075,263 - Pf1N1B4_2736 0.74 +0.9 3,075,263 - Pf1N1B4_2736 0.74 -0.3 3,075,570 + +1.5 3,075,585 + +1.1 3,075,600 + +0.2 3,075,606 + -1.1 3,075,606 + +0.2 3,075,606 + +0.5 3,075,606 + -0.8 3,075,865 + Pf1N1B4_2737 0.10 -1.5 3,075,865 + Pf1N1B4_2737 0.10 -0.4 3,075,865 + Pf1N1B4_2737 0.10 -0.6 3,075,865 + Pf1N1B4_2737 0.10 +1.1 3,075,866 - Pf1N1B4_2737 0.10 +1.2 3,075,866 - Pf1N1B4_2737 0.10 -0.4 3,075,866 - Pf1N1B4_2737 0.10 +0.3 3,075,866 - Pf1N1B4_2737 0.10 -0.1 3,075,866 - Pf1N1B4_2737 0.10 -0.3 3,075,866 - Pf1N1B4_2737 0.10 -1.5 3,075,866 - Pf1N1B4_2737 0.10 -0.5 3,075,866 - Pf1N1B4_2737 0.10 +0.5 3,075,866 - Pf1N1B4_2737 0.10 -0.8 3,076,006 - Pf1N1B4_2737 0.21 -1.5 3,076,064 - Pf1N1B4_2737 0.26 -0.8 3,076,064 - Pf1N1B4_2737 0.26 -0.5 3,076,064 - Pf1N1B4_2737 0.26 -0.2 3,076,114 + Pf1N1B4_2737 0.30 -0.3 3,076,131 + Pf1N1B4_2737 0.31 -0.8 3,076,132 - Pf1N1B4_2737 0.31 -1.4 3,076,220 + Pf1N1B4_2737 0.38 +1.5 3,076,220 + Pf1N1B4_2737 0.38 -0.5 3,076,221 - Pf1N1B4_2737 0.38 -1.1 3,076,221 - Pf1N1B4_2737 0.38 -0.6 3,076,221 - Pf1N1B4_2737 0.38 -0.6 3,076,221 - Pf1N1B4_2737 0.38 +0.3 3,076,221 - Pf1N1B4_2737 0.38 +0.3 3,076,399 + Pf1N1B4_2737 0.52 -0.4 3,076,400 - Pf1N1B4_2737 0.52 -0.6 3,076,400 - Pf1N1B4_2737 0.52 +1.5 3,076,400 - Pf1N1B4_2737 0.52 +0.3 3,076,576 - Pf1N1B4_2737 0.66 +0.1 3,076,579 + Pf1N1B4_2737 0.66 -1.6 3,076,579 + Pf1N1B4_2737 0.66 -0.1 3,076,579 + Pf1N1B4_2737 0.66 -0.4 3,076,579 + Pf1N1B4_2737 0.66 +1.1 3,076,579 + Pf1N1B4_2737 0.66 -0.5 3,076,579 + Pf1N1B4_2737 0.66 +0.4 3,076,579 + Pf1N1B4_2737 0.66 -1.1 3,076,580 - Pf1N1B4_2737 0.66 +0.3 3,076,580 - Pf1N1B4_2737 0.66 -2.1 3,076,580 - Pf1N1B4_2737 0.66 +1.5 3,076,580 - Pf1N1B4_2737 0.66 -0.3
Or see this region's nucleotide sequence