Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16905

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 2.5 mM
3,696,175	+		LRK54_RS16900	0.61	+0.4
3,696,175	+		LRK54_RS16900	0.61	-0.0
3,696,175	+		LRK54_RS16900	0.61	+0.2
3,696,175	+		LRK54_RS16900	0.61	+0.1
3,696,175	+		LRK54_RS16900	0.61	-1.1
3,696,176	-		LRK54_RS16900	0.61	-0.1
3,696,176	-		LRK54_RS16900	0.61	-0.1
3,696,176	-		LRK54_RS16900	0.61	-1.3
3,696,176	-		LRK54_RS16900	0.61	+0.2
3,696,176	-		LRK54_RS16900	0.61	+1.2
3,696,176	-		LRK54_RS16900	0.61	-0.6
3,696,176	-		LRK54_RS16900	0.61	-1.8
3,696,176	-		LRK54_RS16900	0.61	-0.3
3,696,176	-		LRK54_RS16900	0.61	-0.1
3,696,176	-		LRK54_RS16900	0.61	+1.4
3,696,223	+		LRK54_RS16900	0.63	+0.6
3,696,223	+		LRK54_RS16900	0.63	-0.4
3,696,223	+		LRK54_RS16900	0.63	-0.2
3,696,223	+		LRK54_RS16900	0.63	-0.8
3,696,223	+		LRK54_RS16900	0.63	-0.1
3,696,223	+		LRK54_RS16900	0.63	-0.0
3,696,223	+		LRK54_RS16900	0.63	-0.4
3,696,223	+		LRK54_RS16900	0.63	-0.3
3,696,223	+		LRK54_RS16900	0.63	-0.8
3,696,223	+		LRK54_RS16900	0.63	-1.3
3,696,223	+		LRK54_RS16900	0.63	-1.0
3,696,223	+		LRK54_RS16900	0.63	-0.9
3,696,223	+		LRK54_RS16900	0.63	-0.4
3,696,224	-		LRK54_RS16900	0.63	+0.1
3,696,224	-		LRK54_RS16900	0.63	-0.5
3,696,224	-		LRK54_RS16900	0.63	+0.2
3,696,224	-		LRK54_RS16900	0.63	-0.0
3,696,224	-		LRK54_RS16900	0.63	+0.2
3,696,224	-		LRK54_RS16900	0.63	-0.2
3,696,224	-		LRK54_RS16900	0.63	-1.1
3,696,224	-		LRK54_RS16900	0.63	-0.4
3,696,224	-		LRK54_RS16900	0.63	-0.3
3,696,224	-		LRK54_RS16900	0.63	-0.4
3,696,304	+		LRK54_RS16900	0.68	-1.8
3,696,304	+		LRK54_RS16900	0.68	-0.5
3,696,304	+		LRK54_RS16900	0.68	-0.5
3,696,304	+		LRK54_RS16900	0.68	-0.9
3,696,304	+		LRK54_RS16900	0.68	+0.1
3,696,304	+		LRK54_RS16900	0.68	-0.2
3,696,304	+		LRK54_RS16900	0.68	-0.1
3,696,304	+		LRK54_RS16900	0.68	-0.4
3,696,304	+		LRK54_RS16900	0.68	-0.6
3,696,304	+		LRK54_RS16900	0.68	-2.1
3,696,304	+		LRK54_RS16900	0.68	-0.6
3,696,304	+		LRK54_RS16900	0.68	-0.2
3,696,305	-		LRK54_RS16900	0.68	-1.2
3,696,305	-		LRK54_RS16900	0.68	+0.4
3,696,305	-		LRK54_RS16900	0.68	+0.3
3,696,305	-		LRK54_RS16900	0.68	-0.6
3,696,305	-		LRK54_RS16900	0.68	-0.2
3,696,305	-		LRK54_RS16900	0.68	+0.2
3,696,305	-		LRK54_RS16900	0.68	+1.1
3,696,384	+		LRK54_RS16900	0.72	-0.3
3,696,384	+		LRK54_RS16900	0.72	-0.3
3,696,385	-		LRK54_RS16900	0.72	+0.5
3,696,385	-		LRK54_RS16900	0.72	+0.9
3,696,433	+		LRK54_RS16900	0.75	-0.9
3,696,433	+		LRK54_RS16900	0.75	-0.7
3,696,433	+		LRK54_RS16900	0.75	-0.4
3,696,433	+		LRK54_RS16900	0.75	-0.5
3,696,433	+		LRK54_RS16900	0.75	+0.2
3,696,433	+		LRK54_RS16900	0.75	-0.4
3,696,433	+		LRK54_RS16900	0.75	+0.8
3,696,433	+		LRK54_RS16900	0.75	+0.4
3,696,433	+		LRK54_RS16900	0.75	+0.1
3,696,433	+		LRK54_RS16900	0.75	-0.4
3,696,433	+		LRK54_RS16900	0.75	-1.3
3,696,433	+		LRK54_RS16900	0.75	-0.4
3,696,434	-		LRK54_RS16900	0.75	-0.7
3,696,434	-		LRK54_RS16900	0.75	-1.1
3,696,434	-		LRK54_RS16900	0.75	-0.5
3,696,434	-		LRK54_RS16900	0.75	-0.1
3,696,434	-		LRK54_RS16900	0.75	+0.2
3,696,434	-		LRK54_RS16900	0.75	-1.2
3,696,434	-		LRK54_RS16900	0.75	-0.1
3,696,434	-		LRK54_RS16900	0.75	-0.5
3,696,434	-		LRK54_RS16900	0.75	-0.2
3,696,434	-		LRK54_RS16900	0.75	+0.1
3,696,434	-		LRK54_RS16900	0.75	-0.7
3,696,441	+		LRK54_RS16900	0.76	+0.2
3,696,441	+		LRK54_RS16900	0.76	-1.1
3,696,441	+		LRK54_RS16900	0.76	-0.9
3,696,441	+		LRK54_RS16900	0.76	+0.4
3,696,441	+		LRK54_RS16900	0.76	-0.5
3,696,441	+		LRK54_RS16900	0.76	-1.3
3,696,441	+		LRK54_RS16900	0.76	-0.9
3,696,441	+		LRK54_RS16900	0.76	-1.4
3,696,441	+		LRK54_RS16900	0.76	-1.0
3,696,441	+		LRK54_RS16900	0.76	+0.4
3,696,441	+		LRK54_RS16900	0.76	+0.4
3,696,441	+		LRK54_RS16900	0.76	-0.0
3,696,442	-		LRK54_RS16900	0.76	-0.0
3,696,442	-		LRK54_RS16900	0.76	-0.5
3,696,442	-		LRK54_RS16900	0.76	+1.2
3,696,442	-		LRK54_RS16900	0.76	-0.1
3,696,442	-		LRK54_RS16900	0.76	-0.3
3,696,442	-		LRK54_RS16900	0.76	-0.5
3,696,442	-		LRK54_RS16900	0.76	+0.0
3,696,442	-		LRK54_RS16900	0.76	-0.5
3,696,442	-		LRK54_RS16900	0.76	-0.5
3,696,442	-		LRK54_RS16900	0.76	+0.6
3,696,442	-		LRK54_RS16900	0.76	-1.0
3,696,442	-		LRK54_RS16900	0.76	-1.6
3,696,442	-		LRK54_RS16900	0.76	-1.0
3,696,442	-		LRK54_RS16900	0.76	-0.2
3,696,442	-		LRK54_RS16900	0.76	-0.6
3,696,442	-		LRK54_RS16900	0.76	-0.5
3,696,442	-		LRK54_RS16900	0.76	+0.3
3,696,495	+		LRK54_RS16900	0.79	+0.1
3,696,495	+		LRK54_RS16900	0.79	-1.5
3,696,495	+		LRK54_RS16900	0.79	+0.1
3,696,495	+		LRK54_RS16900	0.79	+0.9
3,696,495	+		LRK54_RS16900	0.79	+0.7
3,696,495	+		LRK54_RS16900	0.79	+0.7
3,696,495	+		LRK54_RS16900	0.79	-0.8
3,696,495	+		LRK54_RS16900	0.79	-0.9
3,696,495	+		LRK54_RS16900	0.79	-1.1
3,696,495	+		LRK54_RS16900	0.79	-0.4
3,696,496	-		LRK54_RS16900	0.79	-0.7
3,696,496	-		LRK54_RS16900	0.79	-0.0
3,696,496	-		LRK54_RS16900	0.79	+0.7
3,696,496	-		LRK54_RS16900	0.79	+1.1
3,696,496	-		LRK54_RS16900	0.79	-0.6
3,696,496	-		LRK54_RS16900	0.79	-0.1
3,696,496	-		LRK54_RS16900	0.79	-0.2
3,696,496	-		LRK54_RS16900	0.79	-1.1
3,696,550	+		LRK54_RS16900	0.82	-1.0
3,696,551	-		LRK54_RS16900	0.82	-1.5
3,696,551	-		LRK54_RS16900	0.82	+0.0
3,696,596	+		LRK54_RS16900	0.84	+0.6
3,696,596	+		LRK54_RS16900	0.84	+0.0
3,696,596	+		LRK54_RS16900	0.84	-0.7
3,696,596	+		LRK54_RS16900	0.84	-1.2
3,696,596	+		LRK54_RS16900	0.84	-0.4
3,696,596	+		LRK54_RS16900	0.84	-1.1
3,696,597	-		LRK54_RS16900	0.84	-0.8
3,696,597	-		LRK54_RS16900	0.84	-0.0
3,696,597	-		LRK54_RS16900	0.84	-0.9
3,696,597	-		LRK54_RS16900	0.84	-0.7
3,696,619	+		LRK54_RS16900	0.86	+0.2
3,696,619	+		LRK54_RS16900	0.86	-1.1
3,696,619	+		LRK54_RS16900	0.86	+0.4
3,696,619	+		LRK54_RS16900	0.86	-1.2
3,696,619	+		LRK54_RS16900	0.86	-0.2
3,696,619	+		LRK54_RS16900	0.86	-0.5
3,696,619	+		LRK54_RS16900	0.86	+0.9
3,696,619	+		LRK54_RS16900	0.86	+0.1
3,696,619	+		LRK54_RS16900	0.86	-1.0
3,696,619	+		LRK54_RS16900	0.86	+0.2
3,696,619	+		LRK54_RS16900	0.86	+0.8
3,696,619	+		LRK54_RS16900	0.86	-1.8
3,696,619	+		LRK54_RS16900	0.86	-0.3
3,696,619	+		LRK54_RS16900	0.86	+0.4
3,696,619	+		LRK54_RS16900	0.86	+0.0
3,696,619	+		LRK54_RS16900	0.86	-0.6
3,696,619	+		LRK54_RS16900	0.86	+0.3
3,696,619	+		LRK54_RS16900	0.86	-0.6
3,696,619	+		LRK54_RS16900	0.86	-1.5
3,696,619	+		LRK54_RS16900	0.86	-0.0
3,696,619	+		LRK54_RS16900	0.86	+0.1
3,696,619	+		LRK54_RS16900	0.86	-0.2
3,696,619	+		LRK54_RS16900	0.86	-0.7
3,696,620	-		LRK54_RS16900	0.86	-0.1
3,696,620	-		LRK54_RS16900	0.86	-0.5
3,696,620	-		LRK54_RS16900	0.86	+1.2
3,696,620	-		LRK54_RS16900	0.86	-0.3
3,696,620	-		LRK54_RS16900	0.86	+0.2
3,696,620	-		LRK54_RS16900	0.86	-0.1
3,696,620	-		LRK54_RS16900	0.86	-0.0
3,696,620	-		LRK54_RS16900	0.86	-1.3
3,696,620	-		LRK54_RS16900	0.86	-1.0
3,696,620	-		LRK54_RS16900	0.86	-1.9
3,696,620	-		LRK54_RS16900	0.86	+1.2
3,696,620	-		LRK54_RS16900	0.86	-1.1
3,696,620	-		LRK54_RS16900	0.86	-0.6
3,696,620	-		LRK54_RS16900	0.86	-0.1
3,696,620	-		LRK54_RS16900	0.86	+0.3
3,696,620	-		LRK54_RS16900	0.86	-0.1
3,696,620	-		LRK54_RS16900	0.86	-1.0
3,696,620	-		LRK54_RS16900	0.86	-0.6
3,696,620	-		LRK54_RS16900	0.86	-0.6
3,696,620	-		LRK54_RS16900	0.86	-0.4
3,696,620	-		LRK54_RS16900	0.86	+0.2
3,696,620	-		LRK54_RS16900	0.86	-0.1
3,696,620	-		LRK54_RS16900	0.86	-0.8
3,696,620	-		LRK54_RS16900	0.86	-0.0
3,696,620	-		LRK54_RS16900	0.86	-0.5
3,696,620	-		LRK54_RS16900	0.86	-0.1
3,696,621	+		LRK54_RS16900	0.86	-1.4
3,696,621	+		LRK54_RS16900	0.86	-0.2
3,696,621	+		LRK54_RS16900	0.86	-1.5
3,696,621	+		LRK54_RS16900	0.86	+0.3
3,696,622	-		LRK54_RS16900	0.86	-1.0
3,696,622	-		LRK54_RS16900	0.86	-0.3
3,696,622	-		LRK54_RS16900	0.86	+0.9
3,696,622	-		LRK54_RS16900	0.86	-1.1
3,696,622	-		LRK54_RS16900	0.86	+0.1
3,696,692	+		LRK54_RS16900	0.90	-0.7
3,696,692	+		LRK54_RS16900	0.90	+0.1
3,696,692	+		LRK54_RS16900	0.90	-0.3
3,696,692	+		LRK54_RS16900	0.90	+0.0
3,696,692	+		LRK54_RS16900	0.90	-1.1
3,696,692	+		LRK54_RS16900	0.90	+0.1
3,696,692	+		LRK54_RS16900	0.90	-0.7
3,696,692	+		LRK54_RS16900	0.90	-0.3
3,696,692	+		LRK54_RS16900	0.90	-0.9
3,696,692	+		LRK54_RS16900	0.90	-0.2
3,696,692	+		LRK54_RS16900	0.90	-0.1
3,696,692	+		LRK54_RS16900	0.90	-0.1
3,696,692	+		LRK54_RS16900	0.90	-0.5
3,696,693	-		LRK54_RS16900	0.90	-0.9
3,696,693	-		LRK54_RS16900	0.90	-0.2
3,696,693	-		LRK54_RS16900	0.90	+0.0
3,696,693	-		LRK54_RS16900	0.90	+0.1
3,696,693	-		LRK54_RS16900	0.90	-0.2
3,696,693	-		LRK54_RS16900	0.90	-1.0
3,696,693	-		LRK54_RS16900	0.90	-0.6
3,696,693	-		LRK54_RS16900	0.90	+0.5
3,696,693	-		LRK54_RS16900	0.90	+0.3
3,696,693	-		LRK54_RS16900	0.90	+0.2
3,696,693	-		LRK54_RS16900	0.90	+0.4
3,696,693	-		LRK54_RS16900	0.90	-0.0
3,696,693	-		LRK54_RS16900	0.90	+0.0
3,696,693	-		LRK54_RS16900	0.90	-1.2
3,696,693	-		LRK54_RS16900	0.90	-0.2
3,696,791	+				+1.2
3,696,791	+				-0.5
3,696,791	+				-0.6
3,696,791	+				+0.1
3,696,791	+				-0.3
3,696,791	+				+1.1
3,696,791	+				+0.7
3,696,791	+				-0.7
3,696,792	-				+0.5
3,696,792	-				-0.9
3,696,792	-				-0.4
3,697,009	+				+0.4
3,697,009	+				-0.4
3,697,009	+				+0.5
3,697,009	+				-0.7
3,697,009	+				-0.4
3,697,009	+				-0.0
3,697,009	+				-0.6
3,697,015	+				+0.8
3,697,015	+				-0.5
3,697,015	+				+1.5
3,697,015	+				+2.0
3,697,015	+				+0.7
3,697,015	+				+1.3
3,697,015	+				+1.1
3,697,015	+				+0.8
3,697,015	+				+1.1
3,697,015	+				+0.4
3,697,015	+				+0.5
3,697,015	+				-0.5
3,697,015	+				+1.0
3,697,015	+				+0.3
3,697,015	+				+0.7
3,697,015	+				+2.1
3,697,015	+				+2.0
3,697,015	+				+1.0
3,697,015	+				+1.0
3,697,015	+				+1.4
3,697,015	+				+1.4
3,697,015	+				+1.1
3,697,015	+				+0.8
3,697,015	+				+0.2
3,697,015	+				+1.0
3,697,015	+				+0.3
3,697,015	+				+1.7
3,697,015	+				+1.2
3,697,015	+				+1.4
3,697,015	+				+1.1
3,697,015	+				-0.6
3,697,015	+				+1.6
3,697,015	+				+1.3
3,697,015	+				+0.5
3,697,015	+				+1.0
3,697,015	+				+0.7
3,697,015	+				+1.8
3,697,015	+				+0.9
3,697,015	+				+1.2
3,697,015	+				+0.1
3,697,015	+				+0.8
3,697,015	+				+0.7
3,697,015	+				-0.3
3,697,015	+				+0.9
3,697,015	+				+0.8
3,697,015	+				+1.2
3,697,015	+				+1.4
3,697,015	+				+1.0
3,697,015	+				+0.5
3,697,015	+				+0.4
3,697,015	+				+0.8
3,697,015	+				+3.2
3,697,015	+				-0.9
3,697,015	+				+1.2
3,697,015	+				+0.9
3,697,015	+				+1.4
3,697,015	+				+0.8
3,697,015	+				+0.8
3,697,015	+				+0.4
3,697,015	+				+1.4
3,697,015	+				+1.0
3,697,015	+				+0.3
3,697,015	+				+0.5
3,697,015	+				+1.9
3,697,015	+				-0.3
3,697,015	+				+1.2
3,697,015	+				+1.5
3,697,015	+				+0.4
3,697,015	+				+1.6
3,697,015	+				+1.4
3,697,015	+				+0.9
3,697,015	+				+1.7
3,697,015	+				+1.3
3,697,015	+				+0.9
3,697,015	+				-0.1
3,697,015	+				-1.8
3,697,015	+				+2.6
3,697,015	+				+1.3
3,697,015	+				+0.8
3,697,015	+				-0.1
3,697,015	+				+0.4
3,697,015	+				+0.4
3,697,015	+				+2.3
3,697,015	+				+0.6
3,697,015	+				+1.6
3,697,015	+				+1.8
3,697,015	+				+1.5
3,697,015	+				+0.7
3,697,015	+				+0.3
3,697,015	+				+1.3
3,697,780	+				+2.4
3,697,780	+				+1.0
3,697,780	+				+0.8
3,697,780	+				+0.1
3,697,780	+				-0.8
3,697,780	+				+0.2
3,697,780	+				+0.2
3,697,780	+				-0.8
3,697,780	+				+0.7
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