Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS00535

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 2.5 mM
112,619	+		LRK54_RS00530	0.14	-0.1
112,619	+		LRK54_RS00530	0.14	-0.0
112,619	+		LRK54_RS00530	0.14	-0.5
112,619	+		LRK54_RS00530	0.14	-1.5
112,619	+		LRK54_RS00530	0.14	+0.7
112,619	+		LRK54_RS00530	0.14	+0.0
112,619	+		LRK54_RS00530	0.14	+0.5
112,619	+		LRK54_RS00530	0.14	+0.8
112,619	+		LRK54_RS00530	0.14	+1.3
112,619	+		LRK54_RS00530	0.14	+0.5
112,620	-		LRK54_RS00530	0.14	+0.6
112,620	-		LRK54_RS00530	0.14	+0.9
112,620	-		LRK54_RS00530	0.14	-0.2
112,620	-		LRK54_RS00530	0.14	-1.3
112,620	-		LRK54_RS00530	0.14	-0.8
112,620	-		LRK54_RS00530	0.14	-1.3
112,620	-		LRK54_RS00530	0.14	-1.4
112,840	-		LRK54_RS00530	0.38	+0.1
112,851	+		LRK54_RS00530	0.39	+0.0
112,851	+		LRK54_RS00530	0.39	+0.5
112,851	+		LRK54_RS00530	0.39	+0.7
112,851	+		LRK54_RS00530	0.39	+0.4
112,851	+		LRK54_RS00530	0.39	-0.2
112,851	+		LRK54_RS00530	0.39	+0.3
112,851	+		LRK54_RS00530	0.39	-0.8
112,851	+		LRK54_RS00530	0.39	-0.8
112,851	+		LRK54_RS00530	0.39	-0.1
112,851	+		LRK54_RS00530	0.39	-0.0
112,851	+		LRK54_RS00530	0.39	-0.3
112,851	+		LRK54_RS00530	0.39	+0.3
112,851	+		LRK54_RS00530	0.39	+0.5
112,851	+		LRK54_RS00530	0.39	-1.4
112,851	+		LRK54_RS00530	0.39	-1.1
112,851	+		LRK54_RS00530	0.39	-0.7
112,851	+		LRK54_RS00530	0.39	-0.8
112,851	+		LRK54_RS00530	0.39	-1.6
112,851	+		LRK54_RS00530	0.39	+0.4
112,851	+		LRK54_RS00530	0.39	+0.2
112,851	+		LRK54_RS00530	0.39	-0.2
112,851	+		LRK54_RS00530	0.39	-0.7
112,851	+		LRK54_RS00530	0.39	-0.3
112,851	+		LRK54_RS00530	0.39	-0.6
112,852	-		LRK54_RS00530	0.39	+0.3
112,852	-		LRK54_RS00530	0.39	+0.3
112,852	-		LRK54_RS00530	0.39	-1.4
112,852	-		LRK54_RS00530	0.39	-1.2
112,852	-		LRK54_RS00530	0.39	+0.4
112,852	-		LRK54_RS00530	0.39	-0.8
112,852	-		LRK54_RS00530	0.39	+1.4
112,852	-		LRK54_RS00530	0.39	+0.4
112,852	-		LRK54_RS00530	0.39	-0.6
112,852	-		LRK54_RS00530	0.39	+0.2
112,863	+		LRK54_RS00530	0.40	-0.6
112,863	+		LRK54_RS00530	0.40	+0.4
112,863	+		LRK54_RS00530	0.40	+1.1
112,863	+		LRK54_RS00530	0.40	+0.0
112,863	+		LRK54_RS00530	0.40	-1.3
112,863	+		LRK54_RS00530	0.40	-1.6
112,864	-		LRK54_RS00530	0.40	-0.0
112,864	-		LRK54_RS00530	0.40	+0.5
112,864	-		LRK54_RS00530	0.40	-0.8
112,864	-		LRK54_RS00530	0.40	-0.7
113,130	+		LRK54_RS00530	0.68	-1.0
113,130	+		LRK54_RS00530	0.68	+0.7
113,130	+		LRK54_RS00530	0.68	+0.8
113,130	+		LRK54_RS00530	0.68	+0.4
113,130	+		LRK54_RS00530	0.68	-1.0
113,130	+		LRK54_RS00530	0.68	+0.3
113,130	+		LRK54_RS00530	0.68	-0.2
113,130	+		LRK54_RS00530	0.68	-0.3
113,130	+		LRK54_RS00530	0.68	-0.5
113,130	+		LRK54_RS00530	0.68	+1.5
113,130	+		LRK54_RS00530	0.68	-0.7
113,130	+		LRK54_RS00530	0.68	-0.2
113,131	-		LRK54_RS00530	0.69	-1.0
113,131	-		LRK54_RS00530	0.69	+1.0
113,131	-		LRK54_RS00530	0.69	+0.2
113,131	-		LRK54_RS00530	0.69	-0.0
113,131	-		LRK54_RS00530	0.69	-1.3
113,131	-		LRK54_RS00530	0.69	-0.9
113,131	-		LRK54_RS00530	0.69	+0.5
113,131	-		LRK54_RS00530	0.69	-0.2
113,131	-		LRK54_RS00530	0.69	+0.8
113,131	-		LRK54_RS00530	0.69	-0.2
113,131	-		LRK54_RS00530	0.69	+1.0
113,131	-		LRK54_RS00530	0.69	+0.1
113,131	-		LRK54_RS00530	0.69	-0.1
113,131	-		LRK54_RS00530	0.69	+0.4
113,131	-		LRK54_RS00530	0.69	-0.3
113,131	-		LRK54_RS00530	0.69	+1.0
113,131	-		LRK54_RS00530	0.69	-0.7
113,131	-		LRK54_RS00530	0.69	-0.2
113,131	-		LRK54_RS00530	0.69	+0.9
113,157	+		LRK54_RS00530	0.71	-0.8
113,158	-		LRK54_RS00530	0.71	+0.1
113,158	-		LRK54_RS00530	0.71	+0.2
113,313	+		LRK54_RS00530	0.88	+0.1
113,313	+		LRK54_RS00530	0.88	-1.0
113,313	+		LRK54_RS00530	0.88	-0.5
113,313	+		LRK54_RS00530	0.88	-0.3
113,313	+		LRK54_RS00530	0.88	+0.6
113,313	+		LRK54_RS00530	0.88	-0.9
113,313	+		LRK54_RS00530	0.88	+0.6
113,314	-		LRK54_RS00530	0.88	+0.6
113,314	-		LRK54_RS00530	0.88	-0.2
113,314	-		LRK54_RS00530	0.88	+0.5
113,382	+				-0.3
113,382	+				-0.5
113,382	+				-3.1
113,382	+				+1.0
113,382	+				+0.8
113,382	+				+0.0
113,382	+				-1.9
113,382	+				+0.1
113,382	+				-0.6
113,383	-				+0.0
113,383	-				+0.4
113,383	-				-0.7
113,383	-				-0.2
113,477	+				+0.1
113,477	+				-0.2
113,477	+				+0.5
113,477	+				+0.9
113,477	+				-0.8
113,477	+				-0.2
113,477	+				-2.5
113,477	+				+0.2
113,477	+				-0.6
113,477	+				-2.1
113,477	+				-0.4
113,477	+				-1.5
113,477	+				-0.3
113,477	+				-1.0
113,477	+				-1.9
113,477	+				+0.2
113,477	+				+0.3
113,477	+				-0.5
113,477	+				+0.2
113,477	+				-0.2
113,477	+				+0.4
113,477	+				-2.1
113,477	+				-0.4
113,477	+				-0.5
113,477	+				+0.3
113,477	+				-0.9
113,477	+				+0.9
113,477	+				-0.3
113,477	+				-0.3
113,477	+				+0.8
113,477	+				-0.8
113,477	+				-0.4
113,477	+				-0.5
113,477	+				+0.3
113,477	+				-1.4
113,477	+				+0.5
113,477	+				+0.1
113,477	+				+0.0
113,477	+				+0.7
113,477	+				-0.2
113,477	+				+0.2
113,477	+				-0.1
113,477	+				+1.4
113,477	+				+0.6
113,477	+				+0.1
113,477	+				+0.6
113,477	+				-0.6
113,477	+				-0.1
113,477	+				-0.5
113,477	+				-0.2
113,477	+				+0.1
113,477	+				+0.0
113,477	+				+0.8
113,478	-				+0.0
113,478	-				+2.0
113,478	-				-1.4
113,478	-				+0.1
113,478	-				+0.2
113,478	-				-1.2
113,478	-				-0.3
113,478	-				+0.5
113,478	-				-1.6
113,478	-				-0.6
113,478	-				-0.6
113,478	-				+0.4
113,478	-				-0.3
113,478	-				+0.5
113,478	-				+1.1
113,478	-				-0.4
113,478	-				-0.5
113,478	-				+0.5
113,478	-				+0.4
113,478	-				-0.5
113,478	-				+0.3
113,478	-				+0.6
113,478	-				-0.3
113,478	-				+0.9
113,478	-				+0.3
113,478	-				-0.4
113,478	-				-1.0
113,478	-				+0.1
113,478	-				+0.9
113,478	-				-0.8
113,478	-				+0.4
113,478	-				-0.8
113,478	-				-0.8
113,478	-				-0.3
113,478	-				-0.4
113,478	-				-0.7
113,478	-				-0.4
113,478	-				+0.2
113,478	-				+1.0
113,478	-				-0.7
113,478	-				-0.5
113,478	-				+0.6
113,478	-				+0.5
113,478	-				-0.5
113,478	-				-0.4
113,478	-				+0.1
113,479	+				+0.1
113,479	+				-0.2
113,479	+				+1.5
113,479	+				-0.9
113,479	+				-0.1
113,479	+				+0.9
113,479	+				+0.1
113,479	+				+0.7
113,479	+				+0.2
113,479	+				-0.1
113,479	+				-0.3
113,479	+				+0.4
113,479	+				+0.5
113,479	+				+2.0
113,479	+				-0.7
113,479	+				+0.1
113,479	+				-0.5
113,479	+				+0.3
113,479	+				+1.1
113,479	+				+0.4
113,479	+				+0.1
113,479	+				+0.3
113,479	+				-0.7
113,479	+				+0.3
113,479	+				+0.1
113,479	+				-0.3
113,479	+				+0.4
113,479	+				+0.6
113,479	+				+0.6
113,479	+				+1.0
113,479	+				+0.0
113,479	+				+0.3
113,479	+				-0.9
113,479	+				+0.3
113,479	+				+1.0
113,479	+				-0.3
113,479	+				-0.3
113,479	+				+0.5
113,479	+				+0.2
113,479	+				-0.1
113,479	+				-0.6
113,479	+				+0.7
113,479	+				-2.1
113,479	+				+0.2
113,479	+				+0.4
113,479	+				-1.1
113,479	+				-0.8
113,479	+				-0.2
113,480	-				-0.5
113,480	-				+0.3
113,480	-				-0.0
113,480	-				+0.3
113,480	-				-0.5
113,480	-				-1.7
113,480	-				+1.9
113,480	-				+1.3
113,480	-				-0.2
113,480	-				-0.2
113,480	-				-0.0
113,480	-				+0.1
113,480	-				-0.3
113,480	-				-0.2
113,480	-				-0.3
113,480	-				-0.8
113,480	-				+1.2
113,480	-				+0.0
113,480	-				+0.8
113,480	-				-0.5
113,480	-				-1.1
113,480	-				-0.0
113,480	-				+0.0
113,480	-				+2.0
113,480	-				-0.6
113,480	-				+1.7
113,480	-				-0.2
113,480	-				-0.6
113,480	-				+1.2
113,480	-				+0.1
113,480	-				-0.3
113,480	-				-1.5
113,480	-				-0.1
113,480	-				+0.8
113,480	-				+0.2
113,480	-				+1.4
113,480	-				-1.5
113,480	-				-0.8
113,480	-				-0.2
113,480	-				-0.6
113,480	-				-0.2
113,480	-				+0.1
113,480	-				+0.1
113,480	-				-0.9
113,480	-				+0.4
113,480	-				-0.0
113,481	+				-0.7
113,481	+				-0.0
113,481	+				+0.1
113,481	+				-0.3
113,481	+				-0.0
113,481	+				-0.7
113,481	+				+1.8
113,481	+				-1.0
113,481	+				+1.2
113,481	+				-1.2
113,481	+				-1.0
113,481	+				-0.2
113,481	+				-0.8
113,481	+				+0.4
113,481	+				-2.2
113,481	+				-1.3
113,481	+				-0.1
113,481	+				-1.3
113,481	+				-1.1
113,481	+				+0.3
113,481	+				-1.6
113,481	+				-0.4
113,481	+				+0.5
113,481	+				-0.5
113,481	+				+0.1
113,481	+				+2.0
113,481	+				+0.3
113,481	+				-0.7
113,481	+				+0.3
113,481	+				-0.3
113,481	+				+0.7
113,481	+				-0.1
113,481	+				+0.6
113,481	+				+0.3
113,481	+				+0.5
113,481	+				-0.1
113,482	-				+0.3
113,482	-				-1.6
113,482	-				-0.5
113,482	-				-0.1
113,482	-				-0.9
113,482	-				-2.5
113,482	-				+0.4
113,482	-				+0.6
113,482	-				+0.4
113,482	-				+0.1
113,482	-				-0.3
113,482	-				-0.1
113,482	-				-0.7
113,482	-				-0.5
113,482	-				-0.7
113,482	-				+0.3
113,482	-				-0.6
113,482	-				+0.0
113,482	-				+0.8
113,482	-				-1.6
113,482	-				+0.1
113,482	-				+0.2
113,482	-				+0.2
113,482	-				-0.2
113,482	-				-0.1
113,482	-				-0.5
113,482	-				+0.0
113,482	-				+0.9
113,482	-				-0.4
113,482	-				+0.3
113,482	-				-1.6
113,482	-				+0.2
113,482	-				+0.3
113,530	+				-0.5
113,545	+				+0.2
113,545	+				-0.1
113,545	+				+0.5
113,545	+				+1.0
113,545	+				+0.2
113,545	+				+1.2
113,545	+				-0.4
113,545	+				+0.1
113,545	+				+0.4
113,545	+				+1.3
113,545	+				-0.1
113,546	-				+0.6
113,546	-				-0.5
113,546	-				+1.7
113,546	-				-0.3
113,546	-				+0.3
113,546	-				-0.2
113,546	-				+0.3
113,546	-				-0.7
113,546	-				+0.5
113,546	-				+0.1
113,546	-				+0.5
113,546	-				+0.0
113,546	-				+0.4
113,586	+		LRK54_RS00535	0.16	-0.6
113,586	+		LRK54_RS00535	0.16	-0.3
113,586	+		LRK54_RS00535	0.16	-0.2
113,586	+		LRK54_RS00535	0.16	+0.2
113,587	-		LRK54_RS00535	0.16	-0.9
113,587	-		LRK54_RS00535	0.16	-1.0
113,587	-		LRK54_RS00535	0.16	-2.0
113,587	-		LRK54_RS00535	0.16	+0.2
113,587	-		LRK54_RS00535	0.16	-0.0
113,734	+		LRK54_RS00535	0.71	+0.5
113,734	+		LRK54_RS00535	0.71	-0.3
113,734	+		LRK54_RS00535	0.71	-0.2
113,734	+		LRK54_RS00535	0.71	-0.2
113,734	+		LRK54_RS00535	0.71	+0.2
113,734	+		LRK54_RS00535	0.71	+0.4
113,735	-		LRK54_RS00535	0.72	+0.0
113,735	-		LRK54_RS00535	0.72	-0.8
113,890	+				+0.9
113,890	+				+0.6
113,891	-				-0.0
113,932	+				-0.5
113,932	+				-0.6
113,932	+				+0.1
113,932	+				-0.2
113,932	+				+1.4
113,933	-				-0.4
113,933	-				-0.1
113,933	-				-1.0
113,933	-				-0.0
113,933	-				+0.4
113,933	-				-1.2
113,933	-				+0.4
114,273	+				+0.3
114,273	+				-0.5
114,273	+				+1.2
114,273	+				+0.1
114,273	+				+0.2
114,274	-				-1.5
114,274	-				-0.3
114,274	-				-0.5
114,688	+		LRK54_RS00545	0.32	-0.6
114,689	-		LRK54_RS00545	0.32	-1.0
114,800	+		LRK54_RS00545	0.40	+0.3
114,800	+		LRK54_RS00545	0.40	-1.1
114,801	-		LRK54_RS00545	0.40	+0.5
114,801	-		LRK54_RS00545	0.40	+0.7