Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23710 and HSERO_RS23715 are separated by 52 nucleotides HSERO_RS23715 and HSERO_RS23720 overlap by 11 nucleotides HSERO_RS23720 and HSERO_RS23725 are separated by 160 nucleotides
HSERO_RS23710: HSERO_RS23710 - response regulator GlrR, at 5,434,673 to 5,436,055
_RS23710
HSERO_RS23715: HSERO_RS23715 - hypothetical protein, at 5,436,108 to 5,436,608
_RS23715
HSERO_RS23720: HSERO_RS23720 - histidine kinase, at 5,436,598 to 5,438,076
_RS23720
HSERO_RS23725: HSERO_RS23725 - peptidase M20, at 5,438,237 to 5,439,481
_RS23725
Position (kb) 5436
5437
5438
5439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5435.722 kb on + strand, within HSERO_RS23710 at 5435.753 kb on + strand, within HSERO_RS23710 at 5435.791 kb on + strand at 5436.062 kb on + strand at 5436.186 kb on - strand, within HSERO_RS23715 at 5436.193 kb on + strand, within HSERO_RS23715 at 5436.213 kb on + strand, within HSERO_RS23715 at 5436.285 kb on - strand, within HSERO_RS23715 at 5436.311 kb on - strand, within HSERO_RS23715 at 5436.339 kb on - strand, within HSERO_RS23715 at 5436.345 kb on - strand, within HSERO_RS23715 at 5436.363 kb on + strand, within HSERO_RS23715 at 5436.376 kb on + strand, within HSERO_RS23715 at 5436.385 kb on + strand, within HSERO_RS23715 at 5436.509 kb on + strand, within HSERO_RS23715 at 5436.546 kb on + strand, within HSERO_RS23715 at 5436.653 kb on + strand at 5436.723 kb on + strand at 5436.728 kb on + strand at 5436.736 kb on - strand at 5436.738 kb on + strand at 5436.746 kb on - strand, within HSERO_RS23720 at 5436.750 kb on + strand, within HSERO_RS23720 at 5436.759 kb on - strand, within HSERO_RS23720 at 5436.851 kb on + strand, within HSERO_RS23720 at 5436.873 kb on - strand, within HSERO_RS23720 at 5436.899 kb on + strand, within HSERO_RS23720 at 5437.176 kb on - strand, within HSERO_RS23720 at 5437.205 kb on + strand, within HSERO_RS23720 at 5437.210 kb on + strand, within HSERO_RS23720 at 5437.579 kb on - strand, within HSERO_RS23720 at 5437.633 kb on - strand, within HSERO_RS23720 at 5437.640 kb on - strand, within HSERO_RS23720 at 5437.709 kb on + strand, within HSERO_RS23720 at 5437.709 kb on + strand, within HSERO_RS23720 at 5437.709 kb on + strand, within HSERO_RS23720 at 5437.709 kb on + strand, within HSERO_RS23720 at 5437.717 kb on - strand at 5437.815 kb on - strand, within HSERO_RS23720 at 5437.862 kb on + strand, within HSERO_RS23720 at 5438.007 kb on + strand at 5438.066 kb on - strand at 5438.115 kb on - strand at 5438.139 kb on + strand at 5438.195 kb on - strand at 5438.274 kb on - strand at 5438.280 kb on + strand at 5438.297 kb on - strand at 5438.444 kb on + strand, within HSERO_RS23725 at 5438.755 kb on + strand, within HSERO_RS23725 at 5438.958 kb on - strand, within HSERO_RS23725
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 5,435,722 + HSERO_RS23710 0.76 +0.4 5,435,753 + HSERO_RS23710 0.78 +0.1 5,435,791 + +0.3 5,436,062 + -1.0 5,436,186 - HSERO_RS23715 0.16 -1.6 5,436,193 + HSERO_RS23715 0.17 -0.6 5,436,213 + HSERO_RS23715 0.21 -0.1 5,436,285 - HSERO_RS23715 0.35 -0.7 5,436,311 - HSERO_RS23715 0.41 -0.4 5,436,339 - HSERO_RS23715 0.46 -1.6 5,436,345 - HSERO_RS23715 0.47 -0.3 5,436,363 + HSERO_RS23715 0.51 -0.7 5,436,376 + HSERO_RS23715 0.53 -0.7 5,436,385 + HSERO_RS23715 0.55 -1.4 5,436,509 + HSERO_RS23715 0.80 -0.5 5,436,546 + HSERO_RS23715 0.87 -1.6 5,436,653 + -1.3 5,436,723 + -0.5 5,436,728 + +0.6 5,436,736 - +0.1 5,436,738 + -0.3 5,436,746 - HSERO_RS23720 0.10 -0.4 5,436,750 + HSERO_RS23720 0.10 -1.3 5,436,759 - HSERO_RS23720 0.11 -0.7 5,436,851 + HSERO_RS23720 0.17 -0.1 5,436,873 - HSERO_RS23720 0.19 -2.0 5,436,899 + HSERO_RS23720 0.20 +0.4 5,437,176 - HSERO_RS23720 0.39 -0.6 5,437,205 + HSERO_RS23720 0.41 -0.6 5,437,210 + HSERO_RS23720 0.41 -0.6 5,437,579 - HSERO_RS23720 0.66 -0.5 5,437,633 - HSERO_RS23720 0.70 -0.1 5,437,640 - HSERO_RS23720 0.70 -0.2 5,437,709 + HSERO_RS23720 0.75 -0.6 5,437,709 + HSERO_RS23720 0.75 -0.5 5,437,709 + HSERO_RS23720 0.75 -3.5 5,437,709 + HSERO_RS23720 0.75 +0.4 5,437,717 - +0.3 5,437,815 - HSERO_RS23720 0.82 -0.5 5,437,862 + HSERO_RS23720 0.85 -0.4 5,438,007 + -0.8 5,438,066 - -1.2 5,438,115 - -0.4 5,438,139 + -0.2 5,438,195 - -0.2 5,438,274 - +0.3 5,438,280 + -0.2 5,438,297 - -0.0 5,438,444 + HSERO_RS23725 0.17 +2.3 5,438,755 + HSERO_RS23725 0.42 -0.4 5,438,958 - HSERO_RS23725 0.58 +0.5
Or see this region's nucleotide sequence