Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21520 and HSERO_RS21525 are separated by 43 nucleotides HSERO_RS21525 and HSERO_RS21530 are separated by 247 nucleotides HSERO_RS21530 and HSERO_RS21535 are separated by 183 nucleotides
HSERO_RS21520: HSERO_RS21520 - ferredoxin, at 4,924,832 to 4,925,152
_RS21520
HSERO_RS21525: HSERO_RS21525 - alpha/beta hydrolase, at 4,925,196 to 4,925,858
_RS21525
HSERO_RS21530: HSERO_RS21530 - cytochrome C550, at 4,926,106 to 4,927,260
_RS21530
HSERO_RS21535: HSERO_RS21535 - NADH dehydrogenase, at 4,927,444 to 4,929,045
_RS21535
Position (kb) 4926
4927
4928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4925.129 kb on + strand at 4925.129 kb on + strand at 4925.193 kb on + strand at 4925.254 kb on + strand at 4925.429 kb on + strand, within HSERO_RS21525 at 4925.437 kb on - strand, within HSERO_RS21525 at 4925.437 kb on - strand, within HSERO_RS21525 at 4925.668 kb on + strand, within HSERO_RS21525 at 4926.395 kb on + strand, within HSERO_RS21530 at 4926.605 kb on - strand, within HSERO_RS21530 at 4926.617 kb on - strand, within HSERO_RS21530 at 4926.640 kb on - strand, within HSERO_RS21530 at 4926.781 kb on + strand, within HSERO_RS21530 at 4926.946 kb on + strand, within HSERO_RS21530 at 4927.064 kb on - strand, within HSERO_RS21530 at 4927.331 kb on + strand at 4927.331 kb on + strand at 4927.339 kb on - strand at 4927.616 kb on + strand, within HSERO_RS21535 at 4927.616 kb on + strand, within HSERO_RS21535 at 4927.798 kb on + strand, within HSERO_RS21535 at 4927.985 kb on + strand, within HSERO_RS21535 at 4928.120 kb on + strand, within HSERO_RS21535
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 4,925,129 + +2.1 4,925,129 + -0.6 4,925,193 + -0.6 4,925,254 + -2.1 4,925,429 + HSERO_RS21525 0.35 -1.7 4,925,437 - HSERO_RS21525 0.36 -4.1 4,925,437 - HSERO_RS21525 0.36 -0.7 4,925,668 + HSERO_RS21525 0.71 -2.1 4,926,395 + HSERO_RS21530 0.25 +0.1 4,926,605 - HSERO_RS21530 0.43 +0.9 4,926,617 - HSERO_RS21530 0.44 -1.2 4,926,640 - HSERO_RS21530 0.46 +1.5 4,926,781 + HSERO_RS21530 0.58 -0.5 4,926,946 + HSERO_RS21530 0.73 +0.9 4,927,064 - HSERO_RS21530 0.83 -2.2 4,927,331 + -1.6 4,927,331 + -0.1 4,927,339 - -0.3 4,927,616 + HSERO_RS21535 0.11 -1.5 4,927,616 + HSERO_RS21535 0.11 +0.3 4,927,798 + HSERO_RS21535 0.22 +0.4 4,927,985 + HSERO_RS21535 0.34 -0.9 4,928,120 + HSERO_RS21535 0.42 +0.2
Or see this region's nucleotide sequence