Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01765 and HSERO_RS01770 overlap by 14 nucleotides HSERO_RS01770 and HSERO_RS01775 are separated by 166 nucleotides
HSERO_RS01765: HSERO_RS01765 - type II secretion system protein F, at 391,658 to 392,905
_RS01765
HSERO_RS01770: HSERO_RS01770 - general secretion pathway protein GspE, at 392,892 to 394,022
_RS01770
HSERO_RS01775: HSERO_RS01775 - hypothetical protein, at 394,189 to 395,493
_RS01775
Position (kb) 392
393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 391.950 kb on - strand, within HSERO_RS01765 at 392.011 kb on + strand, within HSERO_RS01765 at 392.151 kb on + strand, within HSERO_RS01765 at 392.166 kb on - strand, within HSERO_RS01765 at 392.199 kb on + strand, within HSERO_RS01765 at 392.296 kb on + strand, within HSERO_RS01765 at 392.355 kb on + strand, within HSERO_RS01765 at 392.389 kb on + strand, within HSERO_RS01765 at 392.443 kb on + strand, within HSERO_RS01765 at 392.643 kb on + strand, within HSERO_RS01765 at 392.668 kb on - strand, within HSERO_RS01765 at 392.768 kb on - strand, within HSERO_RS01765 at 392.852 kb on + strand at 392.943 kb on + strand at 392.946 kb on - strand at 393.058 kb on + strand, within HSERO_RS01770 at 393.199 kb on - strand, within HSERO_RS01770 at 393.230 kb on + strand, within HSERO_RS01770 at 393.235 kb on + strand, within HSERO_RS01770 at 393.359 kb on + strand, within HSERO_RS01770 at 393.415 kb on + strand at 393.433 kb on + strand, within HSERO_RS01770 at 393.610 kb on - strand, within HSERO_RS01770 at 393.647 kb on + strand, within HSERO_RS01770 at 393.657 kb on + strand, within HSERO_RS01770 at 393.736 kb on + strand, within HSERO_RS01770 at 393.736 kb on + strand, within HSERO_RS01770 at 393.957 kb on + strand at 393.958 kb on + strand at 394.007 kb on - strand at 394.011 kb on + strand at 394.185 kb on + strand at 394.325 kb on - strand, within HSERO_RS01775 at 394.416 kb on + strand, within HSERO_RS01775 at 394.416 kb on + strand, within HSERO_RS01775 at 394.437 kb on + strand, within HSERO_RS01775 at 394.758 kb on - strand, within HSERO_RS01775 at 394.986 kb on + strand, within HSERO_RS01775
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 391,950 - HSERO_RS01765 0.23 +0.8 392,011 + HSERO_RS01765 0.28 +1.1 392,151 + HSERO_RS01765 0.40 +1.0 392,166 - HSERO_RS01765 0.41 -0.7 392,199 + HSERO_RS01765 0.43 -0.3 392,296 + HSERO_RS01765 0.51 +0.2 392,355 + HSERO_RS01765 0.56 -1.9 392,389 + HSERO_RS01765 0.59 +0.5 392,443 + HSERO_RS01765 0.63 -0.0 392,643 + HSERO_RS01765 0.79 +1.1 392,668 - HSERO_RS01765 0.81 +0.5 392,768 - HSERO_RS01765 0.89 -0.5 392,852 + +4.3 392,943 + -0.9 392,946 - -0.4 393,058 + HSERO_RS01770 0.15 +1.0 393,199 - HSERO_RS01770 0.27 -2.6 393,230 + HSERO_RS01770 0.30 -0.3 393,235 + HSERO_RS01770 0.30 -0.2 393,359 + HSERO_RS01770 0.41 -0.7 393,415 + +0.1 393,433 + HSERO_RS01770 0.48 -0.9 393,610 - HSERO_RS01770 0.63 -0.9 393,647 + HSERO_RS01770 0.67 -0.0 393,657 + HSERO_RS01770 0.68 -1.2 393,736 + HSERO_RS01770 0.75 +1.9 393,736 + HSERO_RS01770 0.75 -0.2 393,957 + -0.5 393,958 + -1.7 394,007 - -0.6 394,011 + -0.3 394,185 + +1.0 394,325 - HSERO_RS01775 0.10 +0.2 394,416 + HSERO_RS01775 0.17 -0.4 394,416 + HSERO_RS01775 0.17 +0.8 394,437 + HSERO_RS01775 0.19 +0.1 394,758 - HSERO_RS01775 0.44 +0.6 394,986 + HSERO_RS01775 0.61 +0.4
Or see this region's nucleotide sequence