Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03603 and CCNA_03604 are separated by 82 nucleotides CCNA_03604 and CCNA_03605 are separated by 85 nucleotides
CCNA_03603: CCNA_03603 - beta-lactamase family protein, at 3,757,062 to 3,758,789
_03603
CCNA_03604: CCNA_03604 - hypothetical protein, at 3,758,872 to 3,759,210
_03604
CCNA_03605: CCNA_03605 - hypothetical protein, at 3,759,296 to 3,760,189
_03605
Position (kb)
3758
3759
3760 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3757.897 kb on - strand, within CCNA_03603 at 3757.917 kb on - strand, within CCNA_03603 at 3757.948 kb on - strand, within CCNA_03603 at 3757.999 kb on - strand, within CCNA_03603 at 3758.009 kb on + strand, within CCNA_03603 at 3758.009 kb on + strand, within CCNA_03603 at 3758.027 kb on - strand, within CCNA_03603 at 3758.030 kb on - strand, within CCNA_03603 at 3758.064 kb on + strand, within CCNA_03603 at 3758.112 kb on + strand, within CCNA_03603 at 3758.120 kb on - strand, within CCNA_03603 at 3758.120 kb on - strand, within CCNA_03603 at 3758.133 kb on + strand, within CCNA_03603 at 3758.149 kb on + strand, within CCNA_03603 at 3758.162 kb on + strand, within CCNA_03603 at 3758.181 kb on + strand, within CCNA_03603 at 3758.305 kb on + strand, within CCNA_03603 at 3758.438 kb on + strand, within CCNA_03603 at 3758.441 kb on + strand, within CCNA_03603 at 3758.446 kb on - strand, within CCNA_03603 at 3758.446 kb on - strand, within CCNA_03603 at 3758.463 kb on + strand, within CCNA_03603 at 3758.482 kb on + strand, within CCNA_03603 at 3758.490 kb on - strand, within CCNA_03603 at 3758.528 kb on + strand, within CCNA_03603 at 3758.533 kb on + strand, within CCNA_03603 at 3758.597 kb on - strand, within CCNA_03603 at 3758.604 kb on + strand, within CCNA_03603 at 3758.604 kb on + strand, within CCNA_03603 at 3758.612 kb on - strand, within CCNA_03603 at 3758.612 kb on - strand, within CCNA_03603 at 3758.632 kb on - strand at 3758.649 kb on - strand at 3758.688 kb on + strand at 3758.791 kb on - strand at 3758.791 kb on - strand at 3758.821 kb on - strand at 3758.869 kb on + strand at 3758.870 kb on - strand at 3758.877 kb on - strand at 3758.877 kb on - strand at 3758.877 kb on - strand at 3758.877 kb on - strand at 3758.880 kb on + strand at 3758.888 kb on - strand at 3758.909 kb on - strand, within CCNA_03604 at 3758.931 kb on + strand, within CCNA_03604 at 3758.938 kb on + strand, within CCNA_03604 at 3758.952 kb on - strand, within CCNA_03604 at 3758.959 kb on + strand, within CCNA_03604 at 3758.987 kb on + strand, within CCNA_03604 at 3759.049 kb on + strand, within CCNA_03604 at 3759.089 kb on + strand, within CCNA_03604 at 3759.113 kb on + strand, within CCNA_03604 at 3759.135 kb on + strand, within CCNA_03604 at 3759.166 kb on + strand, within CCNA_03604 at 3759.179 kb on + strand at 3759.185 kb on - strand at 3759.232 kb on - strand at 3759.236 kb on + strand at 3759.300 kb on - strand at 3759.300 kb on - strand at 3759.328 kb on - strand at 3759.328 kb on - strand at 3759.328 kb on - strand at 3759.332 kb on + strand at 3759.333 kb on + strand at 3759.420 kb on - strand, within CCNA_03605 at 3759.441 kb on + strand, within CCNA_03605 at 3759.506 kb on + strand, within CCNA_03605 at 3759.532 kb on - strand, within CCNA_03605 at 3759.615 kb on - strand, within CCNA_03605 at 3759.631 kb on + strand, within CCNA_03605 at 3759.655 kb on + strand at 3759.666 kb on + strand, within CCNA_03605 at 3759.679 kb on - strand, within CCNA_03605 at 3759.714 kb on - strand, within CCNA_03605 at 3759.752 kb on + strand, within CCNA_03605 at 3759.752 kb on + strand, within CCNA_03605 at 3759.754 kb on - strand, within CCNA_03605 at 3759.802 kb on + strand, within CCNA_03605 at 3759.887 kb on - strand, within CCNA_03605 at 3759.928 kb on - strand, within CCNA_03605 at 3759.933 kb on - strand, within CCNA_03605 at 3759.936 kb on + strand, within CCNA_03605 at 3759.952 kb on - strand, within CCNA_03605 at 3759.993 kb on + strand, within CCNA_03605 at 3760.017 kb on - strand, within CCNA_03605 at 3760.017 kb on - strand, within CCNA_03605 at 3760.074 kb on + strand, within CCNA_03605 at 3760.088 kb on - strand, within CCNA_03605 at 3760.117 kb on + strand at 3760.136 kb on + strand at 3760.157 kb on - strand at 3760.191 kb on + strand at 3760.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 3,757,897 - CCNA_03603 0.48 -0.6 3,757,917 - CCNA_03603 0.49 +1.2 3,757,948 - CCNA_03603 0.51 -0.3 3,757,999 - CCNA_03603 0.54 +0.5 3,758,009 + CCNA_03603 0.55 -0.0 3,758,009 + CCNA_03603 0.55 +0.7 3,758,027 - CCNA_03603 0.56 -0.0 3,758,030 - CCNA_03603 0.56 +0.5 3,758,064 + CCNA_03603 0.58 +1.0 3,758,112 + CCNA_03603 0.61 +0.1 3,758,120 - CCNA_03603 0.61 +0.9 3,758,120 - CCNA_03603 0.61 -1.8 3,758,133 + CCNA_03603 0.62 -0.2 3,758,149 + CCNA_03603 0.63 +0.1 3,758,162 + CCNA_03603 0.64 +0.8 3,758,181 + CCNA_03603 0.65 +0.5 3,758,305 + CCNA_03603 0.72 -0.3 3,758,438 + CCNA_03603 0.80 +0.6 3,758,441 + CCNA_03603 0.80 -0.5 3,758,446 - CCNA_03603 0.80 +0.7 3,758,446 - CCNA_03603 0.80 +0.5 3,758,463 + CCNA_03603 0.81 -1.1 3,758,482 + CCNA_03603 0.82 -0.3 3,758,490 - CCNA_03603 0.83 -0.7 3,758,528 + CCNA_03603 0.85 -0.1 3,758,533 + CCNA_03603 0.85 +0.0 3,758,597 - CCNA_03603 0.89 +1.4 3,758,604 + CCNA_03603 0.89 +0.2 3,758,604 + CCNA_03603 0.89 +0.4 3,758,612 - CCNA_03603 0.90 +0.3 3,758,612 - CCNA_03603 0.90 +1.6 3,758,632 - -1.1 3,758,649 - -0.7 3,758,688 + -0.4 3,758,791 - +0.6 3,758,791 - -0.1 3,758,821 - +0.5 3,758,869 + +1.3 3,758,870 - +0.3 3,758,877 - +0.4 3,758,877 - +1.5 3,758,877 - -0.2 3,758,877 - +0.3 3,758,880 + +1.0 3,758,888 - +0.6 3,758,909 - CCNA_03604 0.11 +1.0 3,758,931 + CCNA_03604 0.17 +1.5 3,758,938 + CCNA_03604 0.19 +2.0 3,758,952 - CCNA_03604 0.24 +2.0 3,758,959 + CCNA_03604 0.26 +1.2 3,758,987 + CCNA_03604 0.34 +1.7 3,759,049 + CCNA_03604 0.52 +1.2 3,759,089 + CCNA_03604 0.64 +0.8 3,759,113 + CCNA_03604 0.71 +1.1 3,759,135 + CCNA_03604 0.78 +0.7 3,759,166 + CCNA_03604 0.87 +0.8 3,759,179 + +0.2 3,759,185 - +2.0 3,759,232 - +0.5 3,759,236 + +1.7 3,759,300 - +0.3 3,759,300 - -0.1 3,759,328 - -0.4 3,759,328 - +0.5 3,759,328 - +0.3 3,759,332 + -2.5 3,759,333 + -1.1 3,759,420 - CCNA_03605 0.14 -0.0 3,759,441 + CCNA_03605 0.16 +0.4 3,759,506 + CCNA_03605 0.23 -0.5 3,759,532 - CCNA_03605 0.26 +0.8 3,759,615 - CCNA_03605 0.36 +0.3 3,759,631 + CCNA_03605 0.37 +0.3 3,759,655 + -0.5 3,759,666 + CCNA_03605 0.41 +0.2 3,759,679 - CCNA_03605 0.43 -0.0 3,759,714 - CCNA_03605 0.47 +0.1 3,759,752 + CCNA_03605 0.51 +0.1 3,759,752 + CCNA_03605 0.51 +0.8 3,759,754 - CCNA_03605 0.51 -1.8 3,759,802 + CCNA_03605 0.57 -0.2 3,759,887 - CCNA_03605 0.66 -0.4 3,759,928 - CCNA_03605 0.71 +1.5 3,759,933 - CCNA_03605 0.71 +0.4 3,759,936 + CCNA_03605 0.72 -0.4 3,759,952 - CCNA_03605 0.73 +0.7 3,759,993 + CCNA_03605 0.78 +0.4 3,760,017 - CCNA_03605 0.81 +0.1 3,760,017 - CCNA_03605 0.81 -0.1 3,760,074 + CCNA_03605 0.87 +0.6 3,760,088 - CCNA_03605 0.89 +1.1 3,760,117 + +0.2 3,760,136 + -0.8 3,760,157 - -0.2 3,760,191 + +1.1 3,760,206 - +1.7
Or see this region's nucleotide sequence