Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02081 and CCNA_02082 are separated by 84 nucleotides CCNA_02082 and CCNA_02083 are separated by 133 nucleotides CCNA_02083 and CCNA_02084 overlap by 4 nucleotides CCNA_02084 and CCNA_02085 overlap by 4 nucleotides
CCNA_02081: CCNA_02081 - Sec-independent protein translocase protein tatB, at 2,231,825 to 2,232,427
_02081
CCNA_02082: CCNA_02082 - Sec-independent protein translocase protein tatA, at 2,232,512 to 2,232,736
_02082
CCNA_02083: CCNA_02083 - chromosome segregation and condensation protein B scpB, at 2,232,870 to 2,233,535
_02083
CCNA_02084: CCNA_02084 - chromosome segregation and condensation protein fusion scpA, at 2,233,532 to 2,234,356
_02084
CCNA_02085: CCNA_02085 - anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase, at 2,234,353 to 2,235,390
_02085
Position (kb)
2232
2233
2234 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2231.892 kb on + strand, within CCNA_02081 at 2231.900 kb on - strand, within CCNA_02081 at 2231.900 kb on - strand, within CCNA_02081 at 2231.954 kb on - strand, within CCNA_02081 at 2231.969 kb on - strand, within CCNA_02081 at 2231.992 kb on - strand, within CCNA_02081 at 2232.023 kb on - strand, within CCNA_02081 at 2232.023 kb on - strand, within CCNA_02081 at 2232.096 kb on + strand, within CCNA_02081 at 2232.101 kb on + strand, within CCNA_02081 at 2232.137 kb on - strand, within CCNA_02081 at 2232.290 kb on - strand, within CCNA_02081 at 2232.443 kb on - strand at 2232.443 kb on - strand at 2232.443 kb on - strand at 2232.458 kb on - strand at 2232.511 kb on - strand at 2232.749 kb on + strand at 2232.764 kb on + strand at 2232.772 kb on - strand at 2232.772 kb on - strand at 2232.772 kb on - strand at 2232.794 kb on - strand at 2232.810 kb on - strand at 2232.821 kb on + strand at 2232.829 kb on - strand at 2232.834 kb on - strand at 2232.960 kb on + strand, within CCNA_02083 at 2232.961 kb on - strand, within CCNA_02083 at 2232.968 kb on - strand, within CCNA_02083 at 2232.975 kb on + strand, within CCNA_02083 at 2233.067 kb on - strand, within CCNA_02083 at 2233.077 kb on - strand, within CCNA_02083 at 2233.077 kb on - strand, within CCNA_02083 at 2233.128 kb on - strand, within CCNA_02083 at 2233.146 kb on + strand, within CCNA_02083 at 2233.167 kb on + strand, within CCNA_02083 at 2233.207 kb on + strand, within CCNA_02083 at 2233.215 kb on - strand, within CCNA_02083 at 2233.221 kb on - strand, within CCNA_02083 at 2233.221 kb on - strand, within CCNA_02083 at 2233.270 kb on + strand, within CCNA_02083 at 2233.270 kb on + strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.278 kb on - strand, within CCNA_02083 at 2233.362 kb on + strand, within CCNA_02083 at 2233.370 kb on - strand, within CCNA_02083 at 2233.375 kb on + strand, within CCNA_02083 at 2233.449 kb on - strand, within CCNA_02083 at 2233.493 kb on - strand at 2233.520 kb on + strand at 2233.520 kb on + strand at 2233.585 kb on - strand at 2233.595 kb on - strand at 2233.595 kb on - strand at 2233.622 kb on - strand, within CCNA_02084 at 2233.645 kb on + strand, within CCNA_02084 at 2233.724 kb on - strand, within CCNA_02084 at 2233.736 kb on - strand, within CCNA_02084 at 2233.741 kb on - strand, within CCNA_02084 at 2233.767 kb on - strand, within CCNA_02084 at 2233.856 kb on + strand, within CCNA_02084 at 2233.864 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.883 kb on - strand, within CCNA_02084 at 2233.906 kb on - strand, within CCNA_02084 at 2233.907 kb on - strand, within CCNA_02084 at 2233.909 kb on + strand, within CCNA_02084 at 2233.909 kb on + strand, within CCNA_02084 at 2233.917 kb on - strand, within CCNA_02084 at 2233.925 kb on + strand, within CCNA_02084 at 2233.995 kb on - strand, within CCNA_02084 at 2234.049 kb on + strand, within CCNA_02084 at 2234.049 kb on + strand, within CCNA_02084 at 2234.057 kb on - strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.072 kb on - strand, within CCNA_02084 at 2234.091 kb on + strand, within CCNA_02084 at 2234.094 kb on - strand, within CCNA_02084 at 2234.117 kb on - strand, within CCNA_02084 at 2234.117 kb on - strand, within CCNA_02084 at 2234.169 kb on + strand, within CCNA_02084 at 2234.219 kb on - strand, within CCNA_02084 at 2234.226 kb on - strand, within CCNA_02084 at 2234.265 kb on - strand, within CCNA_02084 at 2234.268 kb on - strand, within CCNA_02084 at 2234.327 kb on + strand at 2234.395 kb on + strand at 2234.403 kb on - strand at 2234.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,231,892 + CCNA_02081 0.11 -2.7 2,231,900 - CCNA_02081 0.12 +1.7 2,231,900 - CCNA_02081 0.12 +1.3 2,231,954 - CCNA_02081 0.21 +1.6 2,231,969 - CCNA_02081 0.24 +1.5 2,231,992 - CCNA_02081 0.28 -1.2 2,232,023 - CCNA_02081 0.33 -1.3 2,232,023 - CCNA_02081 0.33 -0.4 2,232,096 + CCNA_02081 0.45 -1.5 2,232,101 + CCNA_02081 0.46 -1.1 2,232,137 - CCNA_02081 0.52 +0.7 2,232,290 - CCNA_02081 0.77 -4.7 2,232,443 - +0.7 2,232,443 - +2.1 2,232,443 - +1.2 2,232,458 - -3.9 2,232,511 - +0.8 2,232,749 + -2.5 2,232,764 + -2.4 2,232,772 - -0.7 2,232,772 - +0.0 2,232,772 - -0.8 2,232,794 - +0.9 2,232,810 - +0.3 2,232,821 + +0.2 2,232,829 - +0.2 2,232,834 - +0.4 2,232,960 + CCNA_02083 0.14 +1.2 2,232,961 - CCNA_02083 0.14 +1.7 2,232,968 - CCNA_02083 0.15 +0.8 2,232,975 + CCNA_02083 0.16 +0.8 2,233,067 - CCNA_02083 0.30 +0.2 2,233,077 - CCNA_02083 0.31 +0.0 2,233,077 - CCNA_02083 0.31 -1.3 2,233,128 - CCNA_02083 0.39 +0.8 2,233,146 + CCNA_02083 0.41 -2.0 2,233,167 + CCNA_02083 0.45 +1.9 2,233,207 + CCNA_02083 0.51 -2.4 2,233,215 - CCNA_02083 0.52 +0.6 2,233,221 - CCNA_02083 0.53 +2.1 2,233,221 - CCNA_02083 0.53 -0.2 2,233,270 + CCNA_02083 0.60 -0.3 2,233,270 + CCNA_02083 0.60 -0.4 2,233,278 - CCNA_02083 0.61 +0.3 2,233,278 - CCNA_02083 0.61 +0.2 2,233,278 - CCNA_02083 0.61 -0.0 2,233,278 - CCNA_02083 0.61 +1.3 2,233,278 - CCNA_02083 0.61 +0.3 2,233,278 - CCNA_02083 0.61 +0.7 2,233,278 - CCNA_02083 0.61 +0.8 2,233,362 + CCNA_02083 0.74 -1.1 2,233,370 - CCNA_02083 0.75 +1.2 2,233,375 + CCNA_02083 0.76 +0.2 2,233,449 - CCNA_02083 0.87 +0.5 2,233,493 - +1.0 2,233,520 + +0.0 2,233,520 + -0.3 2,233,585 - +0.8 2,233,595 - -1.5 2,233,595 - +0.6 2,233,622 - CCNA_02084 0.11 +0.8 2,233,645 + CCNA_02084 0.14 -1.1 2,233,724 - CCNA_02084 0.23 -0.9 2,233,736 - CCNA_02084 0.25 +1.2 2,233,741 - CCNA_02084 0.25 +0.3 2,233,767 - CCNA_02084 0.28 +1.0 2,233,856 + CCNA_02084 0.39 -0.3 2,233,864 - CCNA_02084 0.40 +0.8 2,233,883 - CCNA_02084 0.43 +0.3 2,233,883 - CCNA_02084 0.43 +0.1 2,233,883 - CCNA_02084 0.43 -0.8 2,233,883 - CCNA_02084 0.43 +0.7 2,233,883 - CCNA_02084 0.43 +0.5 2,233,883 - CCNA_02084 0.43 +0.1 2,233,906 - CCNA_02084 0.45 +0.8 2,233,907 - CCNA_02084 0.45 -0.8 2,233,909 + CCNA_02084 0.46 +2.0 2,233,909 + CCNA_02084 0.46 +1.0 2,233,917 - CCNA_02084 0.47 -0.6 2,233,925 + CCNA_02084 0.48 -2.3 2,233,995 - CCNA_02084 0.56 +2.2 2,234,049 + CCNA_02084 0.63 -0.1 2,234,049 + CCNA_02084 0.63 -1.1 2,234,057 - CCNA_02084 0.64 +0.6 2,234,072 - CCNA_02084 0.65 -0.4 2,234,072 - CCNA_02084 0.65 -0.2 2,234,072 - CCNA_02084 0.65 +0.3 2,234,091 + CCNA_02084 0.68 -0.1 2,234,094 - CCNA_02084 0.68 -0.1 2,234,117 - CCNA_02084 0.71 +0.6 2,234,117 - CCNA_02084 0.71 +0.5 2,234,169 + CCNA_02084 0.77 -0.8 2,234,219 - CCNA_02084 0.83 +0.0 2,234,226 - CCNA_02084 0.84 -0.1 2,234,265 - CCNA_02084 0.89 +1.4 2,234,268 - CCNA_02084 0.89 +1.0 2,234,327 + -0.7 2,234,395 + -3.3 2,234,403 - +0.4 2,234,437 + +0.2
Or see this region's nucleotide sequence