Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01914 and CCNA_01915 overlap by 4 nucleotides CCNA_01915 and CCNA_03957 overlap by 8 nucleotides CCNA_03957 and CCNA_01916 overlap by 29 nucleotides CCNA_01916 and CCNA_01917 are separated by 140 nucleotides
CCNA_01914: CCNA_01914 - 16S rRNA m(2)G 1207 methyltransferase RsmC, at 2,057,017 to 2,057,925
_01914
CCNA_01915: CCNA_01915 - ribosomal small subunit pseudouridine synthase A, at 2,057,922 to 2,058,662
_01915
CCNA_03957: CCNA_03957 - SirA/YedF/YeeD family regulatory protein, at 2,058,655 to 2,058,888
_03957
CCNA_01916: CCNA_01916 - ribonuclease BN, at 2,058,860 to 2,059,846
_01916
CCNA_01917: CCNA_01917 - alpha-methylacyl-CoA racemase, at 2,059,987 to 2,061,114
_01917
Position (kb)
2058
2059
2060 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2057.870 kb on + strand at 2057.880 kb on + strand at 2057.884 kb on + strand at 2057.915 kb on - strand at 2057.932 kb on - strand at 2057.981 kb on + strand at 2057.990 kb on + strand at 2057.991 kb on + strand at 2058.018 kb on + strand, within CCNA_01915 at 2058.044 kb on - strand, within CCNA_01915 at 2058.137 kb on + strand, within CCNA_01915 at 2058.191 kb on + strand, within CCNA_01915 at 2058.204 kb on - strand, within CCNA_01915 at 2058.229 kb on + strand, within CCNA_01915 at 2058.251 kb on - strand, within CCNA_01915 at 2058.253 kb on + strand, within CCNA_01915 at 2058.263 kb on + strand, within CCNA_01915 at 2058.263 kb on + strand, within CCNA_01915 at 2058.346 kb on - strand, within CCNA_01915 at 2058.346 kb on - strand, within CCNA_01915 at 2058.346 kb on - strand, within CCNA_01915 at 2058.365 kb on - strand, within CCNA_01915 at 2058.365 kb on - strand, within CCNA_01915 at 2058.369 kb on + strand, within CCNA_01915 at 2058.369 kb on + strand, within CCNA_01915 at 2058.377 kb on - strand, within CCNA_01915 at 2058.451 kb on + strand, within CCNA_01915 at 2058.459 kb on - strand, within CCNA_01915 at 2058.475 kb on - strand, within CCNA_01915 at 2058.505 kb on + strand, within CCNA_01915 at 2058.513 kb on - strand, within CCNA_01915 at 2058.513 kb on - strand, within CCNA_01915 at 2058.515 kb on - strand, within CCNA_01915 at 2058.639 kb on + strand at 2058.644 kb on + strand at 2058.652 kb on - strand at 2058.707 kb on + strand, within CCNA_03957 at 2058.707 kb on + strand, within CCNA_03957 at 2058.707 kb on + strand, within CCNA_03957 at 2058.707 kb on + strand, within CCNA_03957 at 2058.707 kb on + strand, within CCNA_03957 at 2058.707 kb on + strand, within CCNA_03957 at 2058.707 kb on + strand, within CCNA_03957 at 2058.715 kb on - strand, within CCNA_03957 at 2058.725 kb on + strand, within CCNA_03957 at 2058.725 kb on - strand, within CCNA_03957 at 2058.762 kb on + strand, within CCNA_03957 at 2058.762 kb on + strand, within CCNA_03957 at 2058.782 kb on - strand, within CCNA_03957 at 2058.788 kb on - strand, within CCNA_03957 at 2058.808 kb on + strand, within CCNA_03957 at 2058.816 kb on - strand, within CCNA_03957 at 2058.816 kb on - strand, within CCNA_03957 at 2058.942 kb on + strand at 2058.942 kb on + strand at 2058.950 kb on - strand at 2058.964 kb on - strand, within CCNA_01916 at 2058.990 kb on + strand, within CCNA_01916 at 2058.990 kb on + strand, within CCNA_01916 at 2058.998 kb on - strand, within CCNA_01916 at 2059.069 kb on - strand, within CCNA_01916 at 2059.137 kb on - strand, within CCNA_01916 at 2059.167 kb on + strand, within CCNA_01916 at 2059.167 kb on + strand, within CCNA_01916 at 2059.175 kb on - strand, within CCNA_01916 at 2059.212 kb on + strand, within CCNA_01916 at 2059.239 kb on - strand, within CCNA_01916 at 2059.239 kb on - strand, within CCNA_01916 at 2059.239 kb on - strand, within CCNA_01916 at 2059.242 kb on + strand, within CCNA_01916 at 2059.277 kb on - strand, within CCNA_01916 at 2059.277 kb on - strand, within CCNA_01916 at 2059.280 kb on - strand at 2059.290 kb on + strand, within CCNA_01916 at 2059.311 kb on + strand, within CCNA_01916 at 2059.311 kb on + strand, within CCNA_01916 at 2059.319 kb on - strand, within CCNA_01916 at 2059.319 kb on - strand, within CCNA_01916 at 2059.346 kb on - strand, within CCNA_01916 at 2059.374 kb on - strand, within CCNA_01916 at 2059.396 kb on + strand, within CCNA_01916 at 2059.460 kb on - strand, within CCNA_01916 at 2059.472 kb on + strand, within CCNA_01916 at 2059.480 kb on - strand, within CCNA_01916 at 2059.487 kb on + strand, within CCNA_01916 at 2059.505 kb on + strand, within CCNA_01916 at 2059.505 kb on + strand, within CCNA_01916 at 2059.513 kb on - strand, within CCNA_01916 at 2059.513 kb on - strand, within CCNA_01916 at 2059.518 kb on + strand at 2059.520 kb on - strand, within CCNA_01916 at 2059.526 kb on - strand, within CCNA_01916 at 2059.591 kb on + strand, within CCNA_01916 at 2059.599 kb on + strand, within CCNA_01916 at 2059.636 kb on + strand, within CCNA_01916 at 2059.644 kb on - strand, within CCNA_01916 at 2059.685 kb on + strand, within CCNA_01916 at 2059.693 kb on - strand, within CCNA_01916 at 2059.724 kb on + strand, within CCNA_01916 at 2059.725 kb on - strand, within CCNA_01916 at 2059.757 kb on + strand at 2059.768 kb on + strand at 2059.768 kb on + strand at 2059.770 kb on - strand at 2059.770 kb on - strand at 2059.770 kb on - strand at 2059.778 kb on + strand at 2059.825 kb on - strand at 2059.825 kb on - strand at 2059.832 kb on + strand at 2059.840 kb on - strand at 2059.878 kb on + strand at 2059.898 kb on - strand at 2059.915 kb on - strand at 2059.923 kb on - strand at 2059.951 kb on + strand at 2059.963 kb on + strand at 2059.965 kb on + strand at 2059.974 kb on + strand at 2059.976 kb on + strand at 2059.987 kb on - strand at 2060.003 kb on + strand at 2060.003 kb on + strand at 2060.005 kb on - strand at 2060.011 kb on - strand at 2060.011 kb on - strand at 2060.028 kb on + strand at 2060.159 kb on - strand, within CCNA_01917 at 2060.161 kb on + strand, within CCNA_01917 at 2060.162 kb on - strand, within CCNA_01917 at 2060.169 kb on - strand, within CCNA_01917 at 2060.169 kb on - strand, within CCNA_01917 at 2060.169 kb on - strand, within CCNA_01917 at 2060.169 kb on - strand, within CCNA_01917 at 2060.182 kb on - strand, within CCNA_01917 at 2060.206 kb on + strand, within CCNA_01917 at 2060.211 kb on + strand, within CCNA_01917 at 2060.214 kb on - strand, within CCNA_01917 at 2060.219 kb on - strand, within CCNA_01917 at 2060.219 kb on - strand, within CCNA_01917 at 2060.229 kb on + strand, within CCNA_01917 at 2060.237 kb on - strand, within CCNA_01917 at 2060.237 kb on - strand, within CCNA_01917 at 2060.269 kb on - strand, within CCNA_01917 at 2060.275 kb on - strand, within CCNA_01917 at 2060.300 kb on - strand, within CCNA_01917 at 2060.324 kb on - strand, within CCNA_01917 at 2060.332 kb on + strand, within CCNA_01917 at 2060.381 kb on - strand, within CCNA_01917 at 2060.386 kb on - strand, within CCNA_01917 at 2060.386 kb on - strand, within CCNA_01917 at 2060.414 kb on + strand, within CCNA_01917 at 2060.441 kb on + strand, within CCNA_01917 at 2060.441 kb on + strand, within CCNA_01917 at 2060.441 kb on + strand, within CCNA_01917 at 2060.467 kb on - strand, within CCNA_01917 at 2060.496 kb on + strand, within CCNA_01917 at 2060.513 kb on - strand, within CCNA_01917 at 2060.518 kb on + strand, within CCNA_01917 at 2060.538 kb on - strand at 2060.603 kb on - strand, within CCNA_01917 at 2060.604 kb on - strand, within CCNA_01917 at 2060.621 kb on + strand, within CCNA_01917 at 2060.667 kb on - strand, within CCNA_01917 at 2060.718 kb on - strand, within CCNA_01917 at 2060.766 kb on + strand, within CCNA_01917 at 2060.769 kb on - strand, within CCNA_01917 at 2060.774 kb on - strand, within CCNA_01917 at 2060.774 kb on - strand, within CCNA_01917 at 2060.774 kb on - strand, within CCNA_01917 at 2060.774 kb on - strand, within CCNA_01917 at 2060.795 kb on + strand, within CCNA_01917 at 2060.795 kb on + strand, within CCNA_01917 at 2060.795 kb on + strand, within CCNA_01917 at 2060.796 kb on + strand, within CCNA_01917 at 2060.827 kb on - strand, within CCNA_01917 at 2060.840 kb on - strand, within CCNA_01917
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,057,870 + +1.5 2,057,880 + +1.0 2,057,884 + -0.4 2,057,915 - +1.0 2,057,932 - -1.9 2,057,981 + -0.9 2,057,990 + +1.1 2,057,991 + +1.4 2,058,018 + CCNA_01915 0.13 -2.1 2,058,044 - CCNA_01915 0.16 -1.4 2,058,137 + CCNA_01915 0.29 +0.8 2,058,191 + CCNA_01915 0.36 -1.6 2,058,204 - CCNA_01915 0.38 -1.7 2,058,229 + CCNA_01915 0.41 -1.4 2,058,251 - CCNA_01915 0.44 -0.8 2,058,253 + CCNA_01915 0.45 +0.4 2,058,263 + CCNA_01915 0.46 -0.8 2,058,263 + CCNA_01915 0.46 -1.1 2,058,346 - CCNA_01915 0.57 -2.5 2,058,346 - CCNA_01915 0.57 -0.7 2,058,346 - CCNA_01915 0.57 -1.9 2,058,365 - CCNA_01915 0.60 -0.4 2,058,365 - CCNA_01915 0.60 -2.8 2,058,369 + CCNA_01915 0.60 -2.7 2,058,369 + CCNA_01915 0.60 -1.0 2,058,377 - CCNA_01915 0.61 -0.9 2,058,451 + CCNA_01915 0.71 -0.8 2,058,459 - CCNA_01915 0.72 -2.6 2,058,475 - CCNA_01915 0.75 +0.4 2,058,505 + CCNA_01915 0.79 -0.9 2,058,513 - CCNA_01915 0.80 -0.7 2,058,513 - CCNA_01915 0.80 -1.2 2,058,515 - CCNA_01915 0.80 -1.6 2,058,639 + -0.0 2,058,644 + +0.7 2,058,652 - -1.2 2,058,707 + CCNA_03957 0.22 -0.7 2,058,707 + CCNA_03957 0.22 +1.1 2,058,707 + CCNA_03957 0.22 -0.8 2,058,707 + CCNA_03957 0.22 +0.0 2,058,707 + CCNA_03957 0.22 +0.8 2,058,707 + CCNA_03957 0.22 +0.6 2,058,707 + CCNA_03957 0.22 +0.4 2,058,715 - CCNA_03957 0.26 -0.2 2,058,725 + CCNA_03957 0.30 -0.3 2,058,725 - CCNA_03957 0.30 +0.5 2,058,762 + CCNA_03957 0.46 +1.0 2,058,762 + CCNA_03957 0.46 +0.7 2,058,782 - CCNA_03957 0.54 +2.4 2,058,788 - CCNA_03957 0.57 -0.6 2,058,808 + CCNA_03957 0.65 +0.3 2,058,816 - CCNA_03957 0.69 -1.4 2,058,816 - CCNA_03957 0.69 -0.4 2,058,942 + +0.6 2,058,942 + -1.1 2,058,950 - +3.4 2,058,964 - CCNA_01916 0.11 +0.5 2,058,990 + CCNA_01916 0.13 -0.9 2,058,990 + CCNA_01916 0.13 -0.6 2,058,998 - CCNA_01916 0.14 -0.1 2,059,069 - CCNA_01916 0.21 +0.6 2,059,137 - CCNA_01916 0.28 +0.8 2,059,167 + CCNA_01916 0.31 -0.5 2,059,167 + CCNA_01916 0.31 -0.8 2,059,175 - CCNA_01916 0.32 +0.9 2,059,212 + CCNA_01916 0.36 -2.0 2,059,239 - CCNA_01916 0.38 +2.2 2,059,239 - CCNA_01916 0.38 +0.7 2,059,239 - CCNA_01916 0.38 -1.1 2,059,242 + CCNA_01916 0.39 -1.3 2,059,277 - CCNA_01916 0.42 +1.1 2,059,277 - CCNA_01916 0.42 +0.8 2,059,280 - +3.4 2,059,290 + CCNA_01916 0.44 -2.0 2,059,311 + CCNA_01916 0.46 -1.2 2,059,311 + CCNA_01916 0.46 -0.4 2,059,319 - CCNA_01916 0.47 +2.7 2,059,319 - CCNA_01916 0.47 +2.1 2,059,346 - CCNA_01916 0.49 +2.0 2,059,374 - CCNA_01916 0.52 -1.4 2,059,396 + CCNA_01916 0.54 +3.9 2,059,460 - CCNA_01916 0.61 -0.0 2,059,472 + CCNA_01916 0.62 +1.9 2,059,480 - CCNA_01916 0.63 +1.4 2,059,487 + CCNA_01916 0.64 -1.1 2,059,505 + CCNA_01916 0.65 -1.2 2,059,505 + CCNA_01916 0.65 +0.2 2,059,513 - CCNA_01916 0.66 +3.0 2,059,513 - CCNA_01916 0.66 +1.8 2,059,518 + -0.2 2,059,520 - CCNA_01916 0.67 +1.7 2,059,526 - CCNA_01916 0.67 +1.5 2,059,591 + CCNA_01916 0.74 +0.3 2,059,599 + CCNA_01916 0.75 +0.1 2,059,636 + CCNA_01916 0.79 -0.9 2,059,644 - CCNA_01916 0.79 +2.1 2,059,685 + CCNA_01916 0.84 +0.3 2,059,693 - CCNA_01916 0.84 +1.1 2,059,724 + CCNA_01916 0.88 +1.6 2,059,725 - CCNA_01916 0.88 +1.1 2,059,757 + +1.0 2,059,768 + +1.1 2,059,768 + -0.8 2,059,770 - +0.3 2,059,770 - +0.7 2,059,770 - +2.0 2,059,778 + +0.1 2,059,825 - -0.9 2,059,825 - +0.1 2,059,832 + +1.2 2,059,840 - +2.6 2,059,878 + -1.4 2,059,898 - -0.3 2,059,915 - +1.8 2,059,923 - -0.2 2,059,951 + -2.2 2,059,963 + +0.5 2,059,965 + +0.4 2,059,974 + +0.9 2,059,976 + -0.1 2,059,987 - +1.0 2,060,003 + +1.0 2,060,003 + -1.3 2,060,005 - +1.3 2,060,011 - -0.1 2,060,011 - +0.2 2,060,028 + -0.9 2,060,159 - CCNA_01917 0.15 -1.1 2,060,161 + CCNA_01917 0.15 +0.2 2,060,162 - CCNA_01917 0.16 -2.5 2,060,169 - CCNA_01917 0.16 +0.3 2,060,169 - CCNA_01917 0.16 -0.7 2,060,169 - CCNA_01917 0.16 -0.2 2,060,169 - CCNA_01917 0.16 +0.2 2,060,182 - CCNA_01917 0.17 -0.1 2,060,206 + CCNA_01917 0.19 +1.9 2,060,211 + CCNA_01917 0.20 -1.3 2,060,214 - CCNA_01917 0.20 +1.6 2,060,219 - CCNA_01917 0.21 -1.4 2,060,219 - CCNA_01917 0.21 -0.8 2,060,229 + CCNA_01917 0.21 -1.7 2,060,237 - CCNA_01917 0.22 +1.1 2,060,237 - CCNA_01917 0.22 +0.1 2,060,269 - CCNA_01917 0.25 +1.0 2,060,275 - CCNA_01917 0.26 -0.2 2,060,300 - CCNA_01917 0.28 +1.4 2,060,324 - CCNA_01917 0.30 -2.2 2,060,332 + CCNA_01917 0.31 -1.1 2,060,381 - CCNA_01917 0.35 -2.3 2,060,386 - CCNA_01917 0.35 -1.9 2,060,386 - CCNA_01917 0.35 -2.1 2,060,414 + CCNA_01917 0.38 -2.0 2,060,441 + CCNA_01917 0.40 -2.1 2,060,441 + CCNA_01917 0.40 +0.2 2,060,441 + CCNA_01917 0.40 -2.1 2,060,467 - CCNA_01917 0.43 -2.2 2,060,496 + CCNA_01917 0.45 -1.1 2,060,513 - CCNA_01917 0.47 -1.9 2,060,518 + CCNA_01917 0.47 -0.8 2,060,538 - +0.4 2,060,603 - CCNA_01917 0.55 -0.4 2,060,604 - CCNA_01917 0.55 -0.3 2,060,621 + CCNA_01917 0.56 -1.1 2,060,667 - CCNA_01917 0.60 +0.5 2,060,718 - CCNA_01917 0.65 -2.2 2,060,766 + CCNA_01917 0.69 +0.1 2,060,769 - CCNA_01917 0.69 -0.9 2,060,774 - CCNA_01917 0.70 +0.3 2,060,774 - CCNA_01917 0.70 -2.6 2,060,774 - CCNA_01917 0.70 +0.3 2,060,774 - CCNA_01917 0.70 +0.4 2,060,795 + CCNA_01917 0.72 -0.9 2,060,795 + CCNA_01917 0.72 +0.4 2,060,795 + CCNA_01917 0.72 -0.1 2,060,796 + CCNA_01917 0.72 -0.1 2,060,827 - CCNA_01917 0.74 +0.4 2,060,840 - CCNA_01917 0.76 -1.4
Or see this region's nucleotide sequence