Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00152 and CCNA_00153 are separated by 12 nucleotides CCNA_00153 and CCNA_00154 overlap by 61 nucleotides CCNA_00154 and CCNA_00155 are separated by 177 nucleotides
CCNA_00152: CCNA_00152 - winged helix-turn-helix transcription repressor HrcA, at 161,320 to 162,396
_00152
CCNA_00153: CCNA_00153 - adenine nucleotide exchange factor GrpE, at 162,409 to 163,035
_00153
CCNA_00154: CCNA_00154 - hypothetical protein, at 162,975 to 163,235
_00154
CCNA_00155: CCNA_00155 - DNA polymerase III, beta chain, at 163,413 to 164,531
_00155
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 162.025 kb on + strand, within CCNA_00152 at 162.064 kb on - strand, within CCNA_00152 at 162.075 kb on + strand, within CCNA_00152 at 162.122 kb on + strand, within CCNA_00152 at 162.140 kb on + strand, within CCNA_00152 at 162.140 kb on + strand, within CCNA_00152 at 162.147 kb on + strand, within CCNA_00152 at 162.171 kb on + strand, within CCNA_00152 at 162.171 kb on + strand, within CCNA_00152 at 162.171 kb on + strand, within CCNA_00152 at 162.171 kb on + strand, within CCNA_00152 at 162.179 kb on - strand, within CCNA_00152 at 162.239 kb on - strand, within CCNA_00152 at 162.264 kb on + strand, within CCNA_00152 at 162.267 kb on + strand, within CCNA_00152 at 162.269 kb on + strand, within CCNA_00152 at 162.340 kb on - strand at 162.347 kb on - strand at 162.354 kb on + strand at 162.392 kb on + strand at 162.392 kb on + strand at 162.392 kb on + strand at 162.405 kb on - strand at 162.937 kb on - strand, within CCNA_00153 at 162.952 kb on - strand, within CCNA_00153 at 162.972 kb on + strand, within CCNA_00153 at 162.973 kb on - strand at 162.980 kb on - strand at 162.981 kb on - strand at 163.031 kb on - strand at 163.104 kb on + strand, within CCNA_00154 at 163.112 kb on - strand, within CCNA_00154 at 163.113 kb on - strand, within CCNA_00154 at 163.117 kb on + strand, within CCNA_00154 at 163.117 kb on + strand at 163.117 kb on + strand, within CCNA_00154 at 163.158 kb on + strand, within CCNA_00154 at 163.165 kb on + strand, within CCNA_00154 at 163.171 kb on - strand, within CCNA_00154 at 163.171 kb on - strand, within CCNA_00154 at 163.178 kb on - strand, within CCNA_00154 at 163.209 kb on + strand, within CCNA_00154 at 163.209 kb on + strand, within CCNA_00154 at 163.209 kb on + strand, within CCNA_00154 at 163.209 kb on + strand, within CCNA_00154 at 163.209 kb on + strand, within CCNA_00154 at 163.209 kb on + strand, within CCNA_00154 at 163.217 kb on - strand at 163.217 kb on - strand at 163.217 kb on - strand at 163.217 kb on - strand at 163.217 kb on - strand at 163.217 kb on - strand at 163.217 kb on - strand at 163.218 kb on + strand at 163.218 kb on + strand at 163.218 kb on + strand at 163.223 kb on + strand at 163.226 kb on - strand at 163.226 kb on - strand at 163.226 kb on - strand at 163.231 kb on - strand at 163.233 kb on + strand at 163.289 kb on - strand at 163.297 kb on - strand at 163.304 kb on - strand at 163.348 kb on + strand at 163.365 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 162,025 + CCNA_00152 0.65 +1.2 162,064 - CCNA_00152 0.69 -1.5 162,075 + CCNA_00152 0.70 -1.0 162,122 + CCNA_00152 0.74 -0.5 162,140 + CCNA_00152 0.76 -0.4 162,140 + CCNA_00152 0.76 -1.2 162,147 + CCNA_00152 0.77 +0.2 162,171 + CCNA_00152 0.79 +0.9 162,171 + CCNA_00152 0.79 -0.3 162,171 + CCNA_00152 0.79 +0.8 162,171 + CCNA_00152 0.79 -0.8 162,179 - CCNA_00152 0.80 -1.3 162,239 - CCNA_00152 0.85 -1.7 162,264 + CCNA_00152 0.88 -0.5 162,267 + CCNA_00152 0.88 +0.0 162,269 + CCNA_00152 0.88 +0.0 162,340 - -2.0 162,347 - -1.1 162,354 + +0.2 162,392 + +1.1 162,392 + +1.0 162,392 + +0.3 162,405 - +0.5 162,937 - CCNA_00153 0.84 +0.2 162,952 - CCNA_00153 0.87 -0.2 162,972 + CCNA_00153 0.90 +0.4 162,973 - -0.9 162,980 - +0.1 162,981 - +0.2 163,031 - +0.6 163,104 + CCNA_00154 0.49 +0.4 163,112 - CCNA_00154 0.52 +0.8 163,113 - CCNA_00154 0.53 +0.1 163,117 + CCNA_00154 0.54 +1.0 163,117 + +0.6 163,117 + CCNA_00154 0.54 +1.4 163,158 + CCNA_00154 0.70 -0.1 163,165 + CCNA_00154 0.73 +1.1 163,171 - CCNA_00154 0.75 +0.7 163,171 - CCNA_00154 0.75 +0.9 163,178 - CCNA_00154 0.78 +1.3 163,209 + CCNA_00154 0.90 +0.4 163,209 + CCNA_00154 0.90 +0.7 163,209 + CCNA_00154 0.90 +0.5 163,209 + CCNA_00154 0.90 +1.1 163,209 + CCNA_00154 0.90 +0.1 163,209 + CCNA_00154 0.90 +1.0 163,217 - -0.1 163,217 - +1.1 163,217 - +0.0 163,217 - +0.0 163,217 - -0.1 163,217 - +0.9 163,217 - +0.4 163,218 + -0.2 163,218 + +1.6 163,218 + +1.1 163,223 + -0.2 163,226 - +0.5 163,226 - -0.4 163,226 - -0.4 163,231 - +0.4 163,233 + +0.3 163,289 - +0.9 163,297 - -1.3 163,304 - -0.2 163,348 + +1.4 163,365 + +1.8
Or see this region's nucleotide sequence