Experiment: R2A with Paraquat dichloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23660 and CA265_RS23665 are separated by 78 nucleotides CA265_RS23665 and CA265_RS23670 are separated by 151 nucleotides CA265_RS23670 and CA265_RS23675 are separated by 12 nucleotides
CA265_RS23660: CA265_RS23660 - short-chain dehydrogenase, at 5,781,062 to 5,781,931
_RS23660
CA265_RS23665: CA265_RS23665 - hypothetical protein, at 5,782,010 to 5,782,540
_RS23665
CA265_RS23670: CA265_RS23670 - cyclic nucleotide-binding protein, at 5,782,692 to 5,783,279
_RS23670
CA265_RS23675: CA265_RS23675 - hypothetical protein, at 5,783,292 to 5,783,450
_RS23675
Position (kb) 5782
5783 Strain fitness (log2 ratio) -1
0
1
2 at 5781.038 kb on + strand at 5781.039 kb on - strand at 5781.071 kb on + strand at 5781.097 kb on - strand at 5781.170 kb on + strand, within CA265_RS23660 at 5781.170 kb on + strand, within CA265_RS23660 at 5781.293 kb on - strand, within CA265_RS23660 at 5781.293 kb on - strand, within CA265_RS23660 at 5781.314 kb on - strand, within CA265_RS23660 at 5781.325 kb on + strand, within CA265_RS23660 at 5781.382 kb on - strand, within CA265_RS23660 at 5781.382 kb on - strand, within CA265_RS23660 at 5781.382 kb on - strand, within CA265_RS23660 at 5781.419 kb on + strand, within CA265_RS23660 at 5781.419 kb on + strand, within CA265_RS23660 at 5781.429 kb on + strand at 5781.442 kb on + strand, within CA265_RS23660 at 5781.443 kb on - strand, within CA265_RS23660 at 5781.529 kb on + strand, within CA265_RS23660 at 5781.529 kb on + strand, within CA265_RS23660 at 5781.591 kb on + strand, within CA265_RS23660 at 5781.606 kb on + strand, within CA265_RS23660 at 5781.613 kb on + strand, within CA265_RS23660 at 5781.618 kb on - strand, within CA265_RS23660 at 5781.621 kb on - strand, within CA265_RS23660 at 5781.621 kb on - strand, within CA265_RS23660 at 5781.622 kb on + strand, within CA265_RS23660 at 5781.622 kb on + strand, within CA265_RS23660 at 5781.622 kb on + strand, within CA265_RS23660 at 5781.622 kb on + strand, within CA265_RS23660 at 5781.623 kb on - strand, within CA265_RS23660 at 5781.647 kb on + strand, within CA265_RS23660 at 5781.660 kb on + strand, within CA265_RS23660 at 5781.711 kb on + strand, within CA265_RS23660 at 5781.712 kb on - strand, within CA265_RS23660 at 5781.716 kb on + strand, within CA265_RS23660 at 5781.755 kb on + strand, within CA265_RS23660 at 5781.856 kb on + strand at 5781.977 kb on + strand at 5782.011 kb on + strand at 5782.011 kb on + strand at 5782.012 kb on - strand at 5782.012 kb on - strand at 5782.013 kb on + strand at 5782.154 kb on - strand, within CA265_RS23665 at 5782.248 kb on + strand, within CA265_RS23665 at 5782.339 kb on + strand, within CA265_RS23665 at 5782.339 kb on + strand, within CA265_RS23665 at 5782.351 kb on + strand, within CA265_RS23665 at 5782.352 kb on - strand, within CA265_RS23665 at 5782.448 kb on + strand, within CA265_RS23665 at 5782.448 kb on + strand, within CA265_RS23665 at 5782.469 kb on - strand, within CA265_RS23665 at 5782.484 kb on + strand, within CA265_RS23665 at 5782.564 kb on - strand at 5782.613 kb on + strand at 5782.613 kb on + strand at 5782.614 kb on - strand at 5782.669 kb on - strand at 5782.694 kb on - strand at 5782.695 kb on - strand at 5782.709 kb on + strand at 5782.710 kb on - strand at 5782.729 kb on - strand at 5782.762 kb on + strand, within CA265_RS23670 at 5782.763 kb on - strand, within CA265_RS23670 at 5782.796 kb on + strand, within CA265_RS23670 at 5782.855 kb on - strand, within CA265_RS23670 at 5782.862 kb on + strand, within CA265_RS23670 at 5782.878 kb on - strand, within CA265_RS23670 at 5782.921 kb on - strand, within CA265_RS23670 at 5782.921 kb on - strand, within CA265_RS23670 at 5782.921 kb on - strand, within CA265_RS23670 at 5782.952 kb on + strand, within CA265_RS23670 at 5782.969 kb on - strand, within CA265_RS23670 at 5782.969 kb on - strand, within CA265_RS23670 at 5783.000 kb on + strand, within CA265_RS23670 at 5783.211 kb on + strand, within CA265_RS23670 at 5783.212 kb on - strand, within CA265_RS23670 at 5783.212 kb on - strand, within CA265_RS23670 at 5783.235 kb on + strand at 5783.235 kb on + strand at 5783.253 kb on + strand at 5783.280 kb on - strand at 5783.309 kb on + strand, within CA265_RS23675 at 5783.310 kb on - strand, within CA265_RS23675 at 5783.460 kb on - strand at 5783.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.001 mg/ml remove 5,781,038 + +0.2 5,781,039 - +0.2 5,781,071 + +0.6 5,781,097 - +0.3 5,781,170 + CA265_RS23660 0.12 +1.2 5,781,170 + CA265_RS23660 0.12 +0.1 5,781,293 - CA265_RS23660 0.27 +1.1 5,781,293 - CA265_RS23660 0.27 +0.2 5,781,314 - CA265_RS23660 0.29 -0.1 5,781,325 + CA265_RS23660 0.30 -0.7 5,781,382 - CA265_RS23660 0.37 -0.6 5,781,382 - CA265_RS23660 0.37 +1.6 5,781,382 - CA265_RS23660 0.37 -0.0 5,781,419 + CA265_RS23660 0.41 +0.9 5,781,419 + CA265_RS23660 0.41 -0.1 5,781,429 + +0.8 5,781,442 + CA265_RS23660 0.44 -0.9 5,781,443 - CA265_RS23660 0.44 -0.7 5,781,529 + CA265_RS23660 0.54 -0.5 5,781,529 + CA265_RS23660 0.54 +0.1 5,781,591 + CA265_RS23660 0.61 +0.2 5,781,606 + CA265_RS23660 0.63 +2.1 5,781,613 + CA265_RS23660 0.63 -0.0 5,781,618 - CA265_RS23660 0.64 +0.4 5,781,621 - CA265_RS23660 0.64 -0.3 5,781,621 - CA265_RS23660 0.64 +0.1 5,781,622 + CA265_RS23660 0.64 -0.0 5,781,622 + CA265_RS23660 0.64 +1.4 5,781,622 + CA265_RS23660 0.64 -0.7 5,781,622 + CA265_RS23660 0.64 +0.8 5,781,623 - CA265_RS23660 0.64 +0.8 5,781,647 + CA265_RS23660 0.67 -0.6 5,781,660 + CA265_RS23660 0.69 +0.5 5,781,711 + CA265_RS23660 0.75 -0.5 5,781,712 - CA265_RS23660 0.75 +1.1 5,781,716 + CA265_RS23660 0.75 -0.4 5,781,755 + CA265_RS23660 0.80 +0.6 5,781,856 + -0.4 5,781,977 + -1.6 5,782,011 + +0.5 5,782,011 + -0.5 5,782,012 - +0.2 5,782,012 - -0.8 5,782,013 + -0.2 5,782,154 - CA265_RS23665 0.27 -0.5 5,782,248 + CA265_RS23665 0.45 +0.5 5,782,339 + CA265_RS23665 0.62 +0.8 5,782,339 + CA265_RS23665 0.62 +0.1 5,782,351 + CA265_RS23665 0.64 -0.0 5,782,352 - CA265_RS23665 0.64 +0.6 5,782,448 + CA265_RS23665 0.82 +0.6 5,782,448 + CA265_RS23665 0.82 +2.3 5,782,469 - CA265_RS23665 0.86 +0.9 5,782,484 + CA265_RS23665 0.89 +0.8 5,782,564 - +0.2 5,782,613 + -0.1 5,782,613 + +0.3 5,782,614 - +0.6 5,782,669 - -0.3 5,782,694 - +0.8 5,782,695 - -0.3 5,782,709 + +0.8 5,782,710 - +0.2 5,782,729 - +0.1 5,782,762 + CA265_RS23670 0.12 +0.1 5,782,763 - CA265_RS23670 0.12 +0.5 5,782,796 + CA265_RS23670 0.18 +0.4 5,782,855 - CA265_RS23670 0.28 -0.7 5,782,862 + CA265_RS23670 0.29 -0.1 5,782,878 - CA265_RS23670 0.32 +0.4 5,782,921 - CA265_RS23670 0.39 -0.5 5,782,921 - CA265_RS23670 0.39 -1.7 5,782,921 - CA265_RS23670 0.39 +1.2 5,782,952 + CA265_RS23670 0.44 -1.5 5,782,969 - CA265_RS23670 0.47 -0.0 5,782,969 - CA265_RS23670 0.47 +0.3 5,783,000 + CA265_RS23670 0.52 -0.0 5,783,211 + CA265_RS23670 0.88 -0.4 5,783,212 - CA265_RS23670 0.88 +0.2 5,783,212 - CA265_RS23670 0.88 -0.4 5,783,235 + +1.0 5,783,235 + +1.3 5,783,253 + +0.2 5,783,280 - +0.7 5,783,309 + CA265_RS23675 0.11 +1.3 5,783,310 - CA265_RS23675 0.11 -0.2 5,783,460 - -0.0 5,783,502 - -0.1
Or see this region's nucleotide sequence