Experiment: R2A with Paraquat dichloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22795 and CA265_RS22800 are separated by 132 nucleotides CA265_RS22800 and CA265_RS22805 are separated by 0 nucleotides CA265_RS22805 and CA265_RS22810 are separated by 56 nucleotides
CA265_RS22795: CA265_RS22795 - antibiotic ABC transporter ATP-binding protein, at 5,576,653 to 5,578,470
_RS22795
CA265_RS22800: CA265_RS22800 - glycosyl transferase, at 5,578,603 to 5,579,589
_RS22800
CA265_RS22805: CA265_RS22805 - glycosyl transferase, at 5,579,590 to 5,580,465
_RS22805
CA265_RS22810: CA265_RS22810 - methylmalonyl Co-A mutase-associated GTPase MeaB, at 5,580,522 to 5,581,415
_RS22810
Position (kb) 5578
5579
5580 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5578.479 kb on - strand at 5578.493 kb on - strand at 5578.493 kb on - strand at 5578.533 kb on - strand at 5578.565 kb on + strand at 5578.644 kb on + strand at 5578.645 kb on - strand at 5578.654 kb on + strand at 5578.656 kb on + strand at 5578.698 kb on + strand at 5578.714 kb on - strand, within CA265_RS22800 at 5578.722 kb on + strand, within CA265_RS22800 at 5578.887 kb on - strand, within CA265_RS22800 at 5578.911 kb on + strand, within CA265_RS22800 at 5578.936 kb on + strand, within CA265_RS22800 at 5578.936 kb on + strand, within CA265_RS22800 at 5578.936 kb on + strand, within CA265_RS22800 at 5578.937 kb on - strand, within CA265_RS22800 at 5578.937 kb on - strand, within CA265_RS22800 at 5578.970 kb on + strand, within CA265_RS22800 at 5578.971 kb on - strand, within CA265_RS22800 at 5579.000 kb on - strand, within CA265_RS22800 at 5579.056 kb on + strand, within CA265_RS22800 at 5579.057 kb on - strand, within CA265_RS22800 at 5579.101 kb on + strand, within CA265_RS22800 at 5579.105 kb on + strand, within CA265_RS22800 at 5579.106 kb on - strand, within CA265_RS22800 at 5579.145 kb on - strand, within CA265_RS22800 at 5579.154 kb on + strand, within CA265_RS22800 at 5579.180 kb on + strand, within CA265_RS22800 at 5579.180 kb on + strand at 5579.181 kb on - strand, within CA265_RS22800 at 5579.185 kb on + strand, within CA265_RS22800 at 5579.253 kb on + strand, within CA265_RS22800 at 5579.253 kb on + strand, within CA265_RS22800 at 5579.254 kb on - strand, within CA265_RS22800 at 5579.266 kb on - strand, within CA265_RS22800 at 5579.270 kb on + strand, within CA265_RS22800 at 5579.309 kb on - strand, within CA265_RS22800 at 5579.333 kb on - strand, within CA265_RS22800 at 5579.333 kb on - strand, within CA265_RS22800 at 5579.411 kb on - strand, within CA265_RS22800 at 5579.467 kb on + strand, within CA265_RS22800 at 5579.468 kb on - strand, within CA265_RS22800 at 5579.468 kb on - strand, within CA265_RS22800 at 5579.554 kb on - strand at 5579.555 kb on + strand at 5579.555 kb on + strand at 5579.592 kb on - strand at 5579.592 kb on - strand at 5579.606 kb on + strand at 5579.607 kb on - strand at 5579.638 kb on + strand at 5579.796 kb on + strand, within CA265_RS22805 at 5579.801 kb on + strand, within CA265_RS22805 at 5579.874 kb on + strand, within CA265_RS22805 at 5579.874 kb on + strand, within CA265_RS22805 at 5579.881 kb on + strand, within CA265_RS22805 at 5579.882 kb on - strand, within CA265_RS22805 at 5579.910 kb on - strand, within CA265_RS22805 at 5579.921 kb on + strand, within CA265_RS22805 at 5579.921 kb on + strand, within CA265_RS22805 at 5580.062 kb on + strand, within CA265_RS22805 at 5580.062 kb on + strand, within CA265_RS22805 at 5580.062 kb on + strand, within CA265_RS22805 at 5580.089 kb on - strand, within CA265_RS22805 at 5580.095 kb on - strand, within CA265_RS22805 at 5580.155 kb on + strand, within CA265_RS22805 at 5580.155 kb on + strand, within CA265_RS22805 at 5580.188 kb on + strand, within CA265_RS22805 at 5580.295 kb on - strand, within CA265_RS22805 at 5580.307 kb on - strand, within CA265_RS22805 at 5580.366 kb on + strand, within CA265_RS22805 at 5580.385 kb on + strand at 5580.468 kb on + strand at 5580.468 kb on + strand at 5580.469 kb on - strand at 5580.497 kb on + strand at 5580.498 kb on - strand at 5580.503 kb on + strand at 5580.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.001 mg/ml remove 5,578,479 - +0.5 5,578,493 - -0.1 5,578,493 - -0.6 5,578,533 - -0.8 5,578,565 + -0.7 5,578,644 + +1.1 5,578,645 - -0.4 5,578,654 + -0.4 5,578,656 + +0.0 5,578,698 + +0.5 5,578,714 - CA265_RS22800 0.11 -0.5 5,578,722 + CA265_RS22800 0.12 +0.1 5,578,887 - CA265_RS22800 0.29 +1.4 5,578,911 + CA265_RS22800 0.31 +1.4 5,578,936 + CA265_RS22800 0.34 +1.1 5,578,936 + CA265_RS22800 0.34 +0.4 5,578,936 + CA265_RS22800 0.34 +1.5 5,578,937 - CA265_RS22800 0.34 +0.7 5,578,937 - CA265_RS22800 0.34 +0.7 5,578,970 + CA265_RS22800 0.37 +0.2 5,578,971 - CA265_RS22800 0.37 +0.5 5,579,000 - CA265_RS22800 0.40 +0.6 5,579,056 + CA265_RS22800 0.46 +1.4 5,579,057 - CA265_RS22800 0.46 -1.4 5,579,101 + CA265_RS22800 0.50 +0.4 5,579,105 + CA265_RS22800 0.51 +1.0 5,579,106 - CA265_RS22800 0.51 -0.5 5,579,145 - CA265_RS22800 0.55 -1.2 5,579,154 + CA265_RS22800 0.56 +0.4 5,579,180 + CA265_RS22800 0.58 +0.7 5,579,180 + +2.6 5,579,181 - CA265_RS22800 0.59 +0.7 5,579,185 + CA265_RS22800 0.59 +0.6 5,579,253 + CA265_RS22800 0.66 +0.5 5,579,253 + CA265_RS22800 0.66 +1.8 5,579,254 - CA265_RS22800 0.66 -0.1 5,579,266 - CA265_RS22800 0.67 -0.4 5,579,270 + CA265_RS22800 0.68 +0.7 5,579,309 - CA265_RS22800 0.72 +0.2 5,579,333 - CA265_RS22800 0.74 +0.2 5,579,333 - CA265_RS22800 0.74 +0.5 5,579,411 - CA265_RS22800 0.82 +0.0 5,579,467 + CA265_RS22800 0.88 +1.1 5,579,468 - CA265_RS22800 0.88 +2.2 5,579,468 - CA265_RS22800 0.88 +0.5 5,579,554 - +0.0 5,579,555 + +1.0 5,579,555 + +1.5 5,579,592 - +0.7 5,579,592 - +0.3 5,579,606 + +0.6 5,579,607 - -0.1 5,579,638 + +1.3 5,579,796 + CA265_RS22805 0.24 +1.7 5,579,801 + CA265_RS22805 0.24 +1.4 5,579,874 + CA265_RS22805 0.32 +0.6 5,579,874 + CA265_RS22805 0.32 +0.9 5,579,881 + CA265_RS22805 0.33 +1.0 5,579,882 - CA265_RS22805 0.33 +1.6 5,579,910 - CA265_RS22805 0.37 +0.1 5,579,921 + CA265_RS22805 0.38 +0.7 5,579,921 + CA265_RS22805 0.38 +1.6 5,580,062 + CA265_RS22805 0.54 +1.3 5,580,062 + CA265_RS22805 0.54 +1.1 5,580,062 + CA265_RS22805 0.54 +1.5 5,580,089 - CA265_RS22805 0.57 +0.7 5,580,095 - CA265_RS22805 0.58 +0.7 5,580,155 + CA265_RS22805 0.64 +1.1 5,580,155 + CA265_RS22805 0.64 +1.0 5,580,188 + CA265_RS22805 0.68 +0.6 5,580,295 - CA265_RS22805 0.80 +1.0 5,580,307 - CA265_RS22805 0.82 -0.2 5,580,366 + CA265_RS22805 0.89 +1.4 5,580,385 + -0.1 5,580,468 + -0.1 5,580,468 + +1.0 5,580,469 - -2.6 5,580,497 + -0.5 5,580,498 - +0.1 5,580,503 + -0.4 5,580,554 - -0.3
Or see this region's nucleotide sequence