Experiment: R2A with Paraquat dichloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21035 and CA265_RS21040 overlap by 4 nucleotides CA265_RS21040 and CA265_RS21045 are separated by 169 nucleotides CA265_RS21045 and CA265_RS21050 overlap by 1 nucleotides
CA265_RS21035: CA265_RS21035 - 3-oxoacyl-ACP synthase, at 5,181,487 to 5,182,563
_RS21035
CA265_RS21040: CA265_RS21040 - hypothetical protein, at 5,182,560 to 5,184,047
_RS21040
CA265_RS21045: CA265_RS21045 - hypothetical protein, at 5,184,217 to 5,184,960
_RS21045
CA265_RS21050: CA265_RS21050 - Nif3-like dinuclear metal center hexameric protein, at 5,184,960 to 5,186,057
_RS21050
Position (kb) 5182
5183
5184
5185 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5181.664 kb on + strand, within CA265_RS21035 at 5181.684 kb on - strand, within CA265_RS21035 at 5181.735 kb on + strand, within CA265_RS21035 at 5181.736 kb on - strand, within CA265_RS21035 at 5181.760 kb on - strand, within CA265_RS21035 at 5181.760 kb on - strand, within CA265_RS21035 at 5181.760 kb on - strand, within CA265_RS21035 at 5181.762 kb on + strand, within CA265_RS21035 at 5181.762 kb on + strand, within CA265_RS21035 at 5181.814 kb on - strand, within CA265_RS21035 at 5181.881 kb on - strand, within CA265_RS21035 at 5181.935 kb on - strand, within CA265_RS21035 at 5181.937 kb on + strand, within CA265_RS21035 at 5181.938 kb on - strand, within CA265_RS21035 at 5181.938 kb on - strand, within CA265_RS21035 at 5181.966 kb on + strand, within CA265_RS21035 at 5181.989 kb on + strand, within CA265_RS21035 at 5182.020 kb on + strand, within CA265_RS21035 at 5182.091 kb on + strand, within CA265_RS21035 at 5182.092 kb on - strand, within CA265_RS21035 at 5182.094 kb on + strand, within CA265_RS21035 at 5182.131 kb on + strand, within CA265_RS21035 at 5182.214 kb on - strand, within CA265_RS21035 at 5182.294 kb on - strand, within CA265_RS21035 at 5182.294 kb on - strand, within CA265_RS21035 at 5182.298 kb on + strand, within CA265_RS21035 at 5182.413 kb on - strand, within CA265_RS21035 at 5182.448 kb on + strand, within CA265_RS21035 at 5182.457 kb on + strand at 5182.520 kb on + strand at 5182.540 kb on - strand at 5182.540 kb on - strand at 5182.548 kb on + strand at 5182.643 kb on + strand at 5182.670 kb on + strand at 5182.743 kb on - strand, within CA265_RS21040 at 5182.804 kb on + strand, within CA265_RS21040 at 5182.805 kb on - strand, within CA265_RS21040 at 5182.805 kb on - strand, within CA265_RS21040 at 5182.838 kb on + strand, within CA265_RS21040 at 5182.855 kb on + strand, within CA265_RS21040 at 5182.855 kb on + strand, within CA265_RS21040 at 5182.856 kb on - strand, within CA265_RS21040 at 5182.882 kb on - strand, within CA265_RS21040 at 5182.900 kb on - strand, within CA265_RS21040 at 5182.996 kb on + strand, within CA265_RS21040 at 5182.996 kb on + strand, within CA265_RS21040 at 5182.996 kb on + strand, within CA265_RS21040 at 5182.996 kb on + strand, within CA265_RS21040 at 5182.997 kb on - strand, within CA265_RS21040 at 5182.997 kb on - strand, within CA265_RS21040 at 5183.000 kb on + strand, within CA265_RS21040 at 5183.000 kb on + strand, within CA265_RS21040 at 5183.001 kb on - strand, within CA265_RS21040 at 5183.086 kb on + strand, within CA265_RS21040 at 5183.087 kb on - strand, within CA265_RS21040 at 5183.196 kb on + strand, within CA265_RS21040 at 5183.197 kb on - strand, within CA265_RS21040 at 5183.215 kb on + strand, within CA265_RS21040 at 5183.277 kb on - strand, within CA265_RS21040 at 5183.287 kb on + strand, within CA265_RS21040 at 5183.287 kb on + strand, within CA265_RS21040 at 5183.287 kb on + strand, within CA265_RS21040 at 5183.288 kb on - strand, within CA265_RS21040 at 5183.338 kb on + strand, within CA265_RS21040 at 5183.338 kb on + strand, within CA265_RS21040 at 5183.338 kb on + strand, within CA265_RS21040 at 5183.339 kb on - strand, within CA265_RS21040 at 5183.339 kb on - strand, within CA265_RS21040 at 5183.370 kb on - strand, within CA265_RS21040 at 5183.370 kb on - strand, within CA265_RS21040 at 5183.388 kb on + strand, within CA265_RS21040 at 5183.392 kb on + strand, within CA265_RS21040 at 5183.392 kb on + strand, within CA265_RS21040 at 5183.392 kb on + strand, within CA265_RS21040 at 5183.472 kb on - strand, within CA265_RS21040 at 5183.475 kb on + strand, within CA265_RS21040 at 5183.514 kb on + strand, within CA265_RS21040 at 5183.515 kb on - strand, within CA265_RS21040 at 5183.526 kb on + strand, within CA265_RS21040 at 5183.561 kb on + strand, within CA265_RS21040 at 5183.580 kb on + strand, within CA265_RS21040 at 5183.581 kb on - strand, within CA265_RS21040 at 5183.642 kb on + strand, within CA265_RS21040 at 5183.643 kb on - strand, within CA265_RS21040 at 5183.643 kb on - strand, within CA265_RS21040 at 5183.651 kb on + strand, within CA265_RS21040 at 5183.651 kb on + strand, within CA265_RS21040 at 5183.652 kb on - strand, within CA265_RS21040 at 5183.701 kb on - strand, within CA265_RS21040 at 5183.723 kb on - strand, within CA265_RS21040 at 5183.728 kb on + strand, within CA265_RS21040 at 5183.758 kb on - strand, within CA265_RS21040 at 5183.758 kb on - strand, within CA265_RS21040 at 5183.845 kb on + strand, within CA265_RS21040 at 5183.874 kb on - strand, within CA265_RS21040 at 5183.903 kb on + strand at 5183.904 kb on - strand at 5183.927 kb on + strand at 5183.938 kb on - strand at 5183.946 kb on - strand at 5183.989 kb on - strand at 5184.055 kb on + strand at 5184.057 kb on + strand at 5184.057 kb on + strand at 5184.058 kb on - strand at 5184.058 kb on - strand at 5184.058 kb on - strand at 5184.101 kb on - strand at 5184.112 kb on + strand at 5184.112 kb on + strand at 5184.113 kb on - strand at 5184.118 kb on - strand at 5184.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Paraquat dichloride 0.001 mg/ml remove 5,181,664 + CA265_RS21035 0.16 +0.0 5,181,684 - CA265_RS21035 0.18 -0.2 5,181,735 + CA265_RS21035 0.23 -1.3 5,181,736 - CA265_RS21035 0.23 +0.9 5,181,760 - CA265_RS21035 0.25 -0.2 5,181,760 - CA265_RS21035 0.25 -0.3 5,181,760 - CA265_RS21035 0.25 -0.8 5,181,762 + CA265_RS21035 0.26 -0.8 5,181,762 + CA265_RS21035 0.26 -0.9 5,181,814 - CA265_RS21035 0.30 -0.4 5,181,881 - CA265_RS21035 0.37 +0.2 5,181,935 - CA265_RS21035 0.42 -0.3 5,181,937 + CA265_RS21035 0.42 +0.5 5,181,938 - CA265_RS21035 0.42 -2.2 5,181,938 - CA265_RS21035 0.42 -0.5 5,181,966 + CA265_RS21035 0.44 +0.1 5,181,989 + CA265_RS21035 0.47 +0.5 5,182,020 + CA265_RS21035 0.49 +0.3 5,182,091 + CA265_RS21035 0.56 -0.9 5,182,092 - CA265_RS21035 0.56 -0.2 5,182,094 + CA265_RS21035 0.56 -0.0 5,182,131 + CA265_RS21035 0.60 +0.1 5,182,214 - CA265_RS21035 0.68 -0.8 5,182,294 - CA265_RS21035 0.75 -0.6 5,182,294 - CA265_RS21035 0.75 -0.1 5,182,298 + CA265_RS21035 0.75 -1.1 5,182,413 - CA265_RS21035 0.86 -1.1 5,182,448 + CA265_RS21035 0.89 +0.3 5,182,457 + -0.3 5,182,520 + -0.7 5,182,540 - +0.0 5,182,540 - -2.6 5,182,548 + -0.3 5,182,643 + -0.3 5,182,670 + -0.1 5,182,743 - CA265_RS21040 0.12 -0.7 5,182,804 + CA265_RS21040 0.16 -0.6 5,182,805 - CA265_RS21040 0.16 +1.1 5,182,805 - CA265_RS21040 0.16 +0.2 5,182,838 + CA265_RS21040 0.19 +1.4 5,182,855 + CA265_RS21040 0.20 +0.5 5,182,855 + CA265_RS21040 0.20 +0.1 5,182,856 - CA265_RS21040 0.20 +0.2 5,182,882 - CA265_RS21040 0.22 +0.1 5,182,900 - CA265_RS21040 0.23 -2.3 5,182,996 + CA265_RS21040 0.29 +1.3 5,182,996 + CA265_RS21040 0.29 -1.0 5,182,996 + CA265_RS21040 0.29 +0.1 5,182,996 + CA265_RS21040 0.29 +0.3 5,182,997 - CA265_RS21040 0.29 -0.3 5,182,997 - CA265_RS21040 0.29 -0.1 5,183,000 + CA265_RS21040 0.30 +1.0 5,183,000 + CA265_RS21040 0.30 +0.2 5,183,001 - CA265_RS21040 0.30 -1.2 5,183,086 + CA265_RS21040 0.35 +0.1 5,183,087 - CA265_RS21040 0.35 -1.2 5,183,196 + CA265_RS21040 0.43 -0.5 5,183,197 - CA265_RS21040 0.43 -1.0 5,183,215 + CA265_RS21040 0.44 -0.2 5,183,277 - CA265_RS21040 0.48 +0.7 5,183,287 + CA265_RS21040 0.49 -1.4 5,183,287 + CA265_RS21040 0.49 +1.1 5,183,287 + CA265_RS21040 0.49 -1.8 5,183,288 - CA265_RS21040 0.49 +0.3 5,183,338 + CA265_RS21040 0.52 -0.6 5,183,338 + CA265_RS21040 0.52 -0.3 5,183,338 + CA265_RS21040 0.52 +0.4 5,183,339 - CA265_RS21040 0.52 +2.3 5,183,339 - CA265_RS21040 0.52 -0.0 5,183,370 - CA265_RS21040 0.54 +0.0 5,183,370 - CA265_RS21040 0.54 -0.2 5,183,388 + CA265_RS21040 0.56 +0.2 5,183,392 + CA265_RS21040 0.56 -1.1 5,183,392 + CA265_RS21040 0.56 -0.6 5,183,392 + CA265_RS21040 0.56 -0.4 5,183,472 - CA265_RS21040 0.61 +0.5 5,183,475 + CA265_RS21040 0.61 +0.4 5,183,514 + CA265_RS21040 0.64 -0.0 5,183,515 - CA265_RS21040 0.64 -0.9 5,183,526 + CA265_RS21040 0.65 -1.4 5,183,561 + CA265_RS21040 0.67 +1.0 5,183,580 + CA265_RS21040 0.69 -0.3 5,183,581 - CA265_RS21040 0.69 -0.4 5,183,642 + CA265_RS21040 0.73 -1.4 5,183,643 - CA265_RS21040 0.73 -0.7 5,183,643 - CA265_RS21040 0.73 +0.3 5,183,651 + CA265_RS21040 0.73 +0.0 5,183,651 + CA265_RS21040 0.73 -0.2 5,183,652 - CA265_RS21040 0.73 -0.5 5,183,701 - CA265_RS21040 0.77 +0.4 5,183,723 - CA265_RS21040 0.78 -0.1 5,183,728 + CA265_RS21040 0.78 +0.3 5,183,758 - CA265_RS21040 0.81 -0.1 5,183,758 - CA265_RS21040 0.81 -0.3 5,183,845 + CA265_RS21040 0.86 +1.1 5,183,874 - CA265_RS21040 0.88 -0.3 5,183,903 + -1.9 5,183,904 - -1.5 5,183,927 + -0.3 5,183,938 - +0.3 5,183,946 - -0.2 5,183,989 - -1.1 5,184,055 + +0.3 5,184,057 + -0.4 5,184,057 + -0.1 5,184,058 - -0.0 5,184,058 - -0.8 5,184,058 - +0.2 5,184,101 - -0.9 5,184,112 + -1.9 5,184,112 + +0.1 5,184,113 - -0.4 5,184,118 - -0.1 5,184,198 - -0.7
Or see this region's nucleotide sequence