Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28190 and BPHYT_RS28195 are separated by 243 nucleotides BPHYT_RS28195 and BPHYT_RS28200 are separated by 101 nucleotides BPHYT_RS28200 and BPHYT_RS28205 are separated by 92 nucleotides
BPHYT_RS28190: BPHYT_RS28190 - porin, at 1,883,195 to 1,884,280
_RS28190
BPHYT_RS28195: BPHYT_RS28195 - hypothetical protein, at 1,884,524 to 1,884,850
_RS28195
BPHYT_RS28200: BPHYT_RS28200 - sugar ABC transporter substrate-binding protein, at 1,884,952 to 1,885,959
_RS28200
BPHYT_RS28205: BPHYT_RS28205 - ATPase, at 1,886,052 to 1,887,068
_RS28205
Position (kb)
1884
1885
1886 Strain fitness (log2 ratio)
-2
-1
0
1 at 1885.251 kb on + strand, within BPHYT_RS28200 at 1885.719 kb on - strand, within BPHYT_RS28200 at 1886.358 kb on - strand, within BPHYT_RS28205 at 1886.359 kb on + strand, within BPHYT_RS28205 at 1886.533 kb on - strand, within BPHYT_RS28205 at 1886.559 kb on - strand, within BPHYT_RS28205 at 1886.594 kb on + strand, within BPHYT_RS28205 at 1886.596 kb on + strand, within BPHYT_RS28205 at 1886.642 kb on - strand, within BPHYT_RS28205 at 1886.919 kb on + strand, within BPHYT_RS28205
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,885,251 + BPHYT_RS28200 0.30 +0.0 1,885,719 - BPHYT_RS28200 0.76 +0.3 1,886,358 - BPHYT_RS28205 0.30 -0.2 1,886,359 + BPHYT_RS28205 0.30 -0.1 1,886,533 - BPHYT_RS28205 0.47 -2.2 1,886,559 - BPHYT_RS28205 0.50 -1.2 1,886,594 + BPHYT_RS28205 0.53 -0.3 1,886,596 + BPHYT_RS28205 0.53 -0.4 1,886,642 - BPHYT_RS28205 0.58 +0.2 1,886,919 + BPHYT_RS28205 0.85 -0.1
Or see this region's nucleotide sequence