Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS18325

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS18320 and ABIE51_RS18325 are separated by 207 nucleotidesABIE51_RS18325 and ABIE51_RS18330 are separated by 67 nucleotidesABIE51_RS18330 and ABIE51_RS18335 are separated by 11 nucleotides ABIE51_RS18320: ABIE51_RS18320 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 3,995,754 to 3,997,586 _RS18320 ABIE51_RS18325: ABIE51_RS18325 - HlyD family efflux transporter periplasmic adaptor subunit, at 3,997,794 to 3,999,083 _RS18325 ABIE51_RS18330: ABIE51_RS18330 - ABC transporter ATP-binding protein, at 3,999,151 to 3,999,882 _RS18330 ABIE51_RS18335: ABIE51_RS18335 - ABC transporter permease, at 3,999,894 to 4,001,213 _RS18335 Position (kb) 3997 3998 3999 4000Strain fitness (log2 ratio) -3 -2 -1 0 1at 3997.645 kb on + strandat 3997.646 kb on - strandat 3997.646 kb on - strandat 3997.662 kb on - strandat 3998.052 kb on + strand, within ABIE51_RS18325at 3998.052 kb on + strand, within ABIE51_RS18325at 3998.052 kb on + strand, within ABIE51_RS18325at 3998.052 kb on + strand, within ABIE51_RS18325at 3998.053 kb on - strand, within ABIE51_RS18325at 3998.188 kb on + strand, within ABIE51_RS18325at 3998.188 kb on + strand, within ABIE51_RS18325at 3998.410 kb on - strand, within ABIE51_RS18325at 3998.652 kb on + strand, within ABIE51_RS18325at 3998.652 kb on + strand, within ABIE51_RS18325at 3998.652 kb on + strand, within ABIE51_RS18325at 3998.695 kb on - strand, within ABIE51_RS18325at 3998.695 kb on - strand, within ABIE51_RS18325at 3998.922 kb on + strand, within ABIE51_RS18325at 3998.922 kb on + strand, within ABIE51_RS18325at 3999.106 kb on - strandat 3999.334 kb on + strand, within ABIE51_RS18330at 3999.334 kb on + strand, within ABIE51_RS18330at 3999.335 kb on - strand, within ABIE51_RS18330at 3999.562 kb on + strand, within ABIE51_RS18330at 3999.563 kb on - strand, within ABIE51_RS18330at 3999.904 kb on - strandat 3999.906 kb on + strandat 3999.906 kb on + strandat 3999.906 kb on + strandat 4000.044 kb on + strand, within ABIE51_RS18335at 4000.044 kb on + strand, within ABIE51_RS18335at 4000.044 kb on + strand, within ABIE51_RS18335at 4000.045 kb on - strand, within ABIE51_RS18335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
3,997,645 + +0.4
3,997,646 - +0.5
3,997,646 - -0.6
3,997,662 - +0.4
3,998,052 + ABIE51_RS18325 0.20 -0.1
3,998,052 + ABIE51_RS18325 0.20 +0.0
3,998,052 + ABIE51_RS18325 0.20 -1.4
3,998,052 + ABIE51_RS18325 0.20 -0.3
3,998,053 - ABIE51_RS18325 0.20 -1.1
3,998,188 + ABIE51_RS18325 0.31 +0.1
3,998,188 + ABIE51_RS18325 0.31 -0.7
3,998,410 - ABIE51_RS18325 0.48 -0.3
3,998,652 + ABIE51_RS18325 0.67 +0.2
3,998,652 + ABIE51_RS18325 0.67 -0.9
3,998,652 + ABIE51_RS18325 0.67 +0.8
3,998,695 - ABIE51_RS18325 0.70 -0.1
3,998,695 - ABIE51_RS18325 0.70 -0.2
3,998,922 + ABIE51_RS18325 0.87 -0.2
3,998,922 + ABIE51_RS18325 0.87 -0.4
3,999,106 - +0.9
3,999,334 + ABIE51_RS18330 0.25 -1.3
3,999,334 + ABIE51_RS18330 0.25 -0.5
3,999,335 - ABIE51_RS18330 0.25 +0.2
3,999,562 + ABIE51_RS18330 0.56 -2.9
3,999,563 - ABIE51_RS18330 0.56 -0.7
3,999,904 - +0.1
3,999,906 + +0.7
3,999,906 + +0.4
3,999,906 + +0.4
4,000,044 + ABIE51_RS18335 0.11 -0.6
4,000,044 + ABIE51_RS18335 0.11 +1.1
4,000,044 + ABIE51_RS18335 0.11 -0.2
4,000,045 - ABIE51_RS18335 0.11 -0.1

Or see this region's nucleotide sequence