Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS10085

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS10080 and ABIE51_RS10085 are separated by 142 nucleotidesABIE51_RS10085 and ABIE51_RS10090 overlap by 4 nucleotides ABIE51_RS10080: ABIE51_RS10080 - arginine deiminase, at 2,170,959 to 2,172,212 _RS10080 ABIE51_RS10085: ABIE51_RS10085 - efflux RND transporter periplasmic adaptor subunit, at 2,172,355 to 2,173,461 _RS10085 ABIE51_RS10090: ABIE51_RS10090 - efflux RND transporter permease subunit, at 2,173,458 to 2,176,517 _RS10090 Position (kb) 2172 2173 2174Strain fitness (log2 ratio) -1 0 1 2at 2171.418 kb on + strand, within ABIE51_RS10080at 2171.475 kb on + strand, within ABIE51_RS10080at 2171.864 kb on + strand, within ABIE51_RS10080at 2171.865 kb on - strand, within ABIE51_RS10080at 2171.865 kb on - strand, within ABIE51_RS10080at 2171.874 kb on + strand, within ABIE51_RS10080at 2172.064 kb on - strand, within ABIE51_RS10080at 2172.064 kb on - strand, within ABIE51_RS10080at 2172.084 kb on + strand, within ABIE51_RS10080at 2172.085 kb on - strand, within ABIE51_RS10080at 2172.210 kb on + strandat 2172.211 kb on - strandat 2173.373 kb on + strandat 2173.705 kb on + strandat 2173.791 kb on + strand, within ABIE51_RS10090at 2174.023 kb on - strand, within ABIE51_RS10090

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
2,171,418 + ABIE51_RS10080 0.37 +0.8
2,171,475 + ABIE51_RS10080 0.41 -0.3
2,171,864 + ABIE51_RS10080 0.72 +0.1
2,171,865 - ABIE51_RS10080 0.72 +1.9
2,171,865 - ABIE51_RS10080 0.72 -0.1
2,171,874 + ABIE51_RS10080 0.73 -0.4
2,172,064 - ABIE51_RS10080 0.88 +0.1
2,172,064 - ABIE51_RS10080 0.88 -0.3
2,172,084 + ABIE51_RS10080 0.90 -0.6
2,172,085 - ABIE51_RS10080 0.90 -0.0
2,172,210 + +0.1
2,172,211 - -0.6
2,173,373 + +0.1
2,173,705 + +0.0
2,173,791 + ABIE51_RS10090 0.11 -0.6
2,174,023 - ABIE51_RS10090 0.18 -0.7

Or see this region's nucleotide sequence