Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08930

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS08925 and ABIE51_RS08930 are separated by 146 nucleotidesABIE51_RS08930 and ABIE51_RS08935 are separated by 277 nucleotides ABIE51_RS08925: ABIE51_RS08925 - glycosyltransferase family 9 protein, at 1,905,322 to 1,906,317 _RS08925 ABIE51_RS08930: ABIE51_RS08930 - alpha-2-macroglobulin, at 1,906,464 to 1,911,425 _RS08930 ABIE51_RS08935: ABIE51_RS08935 - penicillin-binding protein 1C, at 1,911,703 to 1,914,054 _RS08935 Position (kb) 1906 1907 1908 1909 1910 1911 1912Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1905.746 kb on + strand, within ABIE51_RS08925at 1905.746 kb on + strand, within ABIE51_RS08925at 1905.747 kb on - strand, within ABIE51_RS08925at 1905.747 kb on - strand, within ABIE51_RS08925at 1905.747 kb on - strand, within ABIE51_RS08925at 1905.863 kb on + strand, within ABIE51_RS08925at 1905.863 kb on + strand, within ABIE51_RS08925at 1905.863 kb on + strand, within ABIE51_RS08925at 1905.864 kb on - strand, within ABIE51_RS08925at 1905.864 kb on - strand, within ABIE51_RS08925at 1905.864 kb on - strand, within ABIE51_RS08925at 1905.864 kb on - strand, within ABIE51_RS08925at 1905.944 kb on + strand, within ABIE51_RS08925at 1905.945 kb on - strand, within ABIE51_RS08925at 1905.977 kb on + strand, within ABIE51_RS08925at 1905.978 kb on - strand, within ABIE51_RS08925at 1905.978 kb on - strand, within ABIE51_RS08925at 1905.978 kb on - strand, within ABIE51_RS08925at 1905.978 kb on - strand, within ABIE51_RS08925at 1906.106 kb on + strand, within ABIE51_RS08925at 1906.303 kb on + strandat 1906.303 kb on + strandat 1906.304 kb on - strandat 1906.304 kb on - strandat 1906.435 kb on + strandat 1906.436 kb on - strandat 1906.437 kb on + strandat 1906.437 kb on + strandat 1906.663 kb on - strandat 1906.851 kb on + strandat 1906.851 kb on + strandat 1906.851 kb on + strandat 1906.851 kb on + strandat 1906.852 kb on - strandat 1906.926 kb on + strandat 1906.926 kb on + strandat 1906.927 kb on - strandat 1907.064 kb on + strand, within ABIE51_RS08930at 1907.088 kb on + strand, within ABIE51_RS08930at 1907.088 kb on + strand, within ABIE51_RS08930at 1907.133 kb on + strand, within ABIE51_RS08930at 1907.175 kb on + strand, within ABIE51_RS08930at 1907.226 kb on + strand, within ABIE51_RS08930at 1907.226 kb on + strand, within ABIE51_RS08930at 1907.226 kb on + strand, within ABIE51_RS08930at 1907.226 kb on + strand, within ABIE51_RS08930at 1907.227 kb on - strand, within ABIE51_RS08930at 1907.271 kb on + strand, within ABIE51_RS08930at 1907.271 kb on + strand, within ABIE51_RS08930at 1907.272 kb on - strand, within ABIE51_RS08930at 1907.272 kb on - strand, within ABIE51_RS08930at 1907.313 kb on + strand, within ABIE51_RS08930at 1907.314 kb on - strand, within ABIE51_RS08930at 1907.356 kb on + strand, within ABIE51_RS08930at 1907.356 kb on + strand, within ABIE51_RS08930at 1907.357 kb on - strand, within ABIE51_RS08930at 1907.364 kb on + strand, within ABIE51_RS08930at 1907.387 kb on + strand, within ABIE51_RS08930at 1907.505 kb on + strand, within ABIE51_RS08930at 1907.505 kb on + strand, within ABIE51_RS08930at 1907.505 kb on + strand, within ABIE51_RS08930at 1907.506 kb on - strand, within ABIE51_RS08930at 1907.506 kb on - strand, within ABIE51_RS08930at 1907.506 kb on - strand, within ABIE51_RS08930at 1907.523 kb on + strand, within ABIE51_RS08930at 1907.523 kb on + strand, within ABIE51_RS08930at 1907.524 kb on - strand, within ABIE51_RS08930at 1907.524 kb on - strand, within ABIE51_RS08930at 1907.524 kb on - strand, within ABIE51_RS08930at 1907.524 kb on - strand, within ABIE51_RS08930at 1907.524 kb on - strand, within ABIE51_RS08930at 1907.662 kb on - strand, within ABIE51_RS08930at 1907.766 kb on + strand, within ABIE51_RS08930at 1907.766 kb on + strand, within ABIE51_RS08930at 1907.766 kb on + strand, within ABIE51_RS08930at 1907.766 kb on + strand, within ABIE51_RS08930at 1907.767 kb on - strand, within ABIE51_RS08930at 1907.767 kb on - strand, within ABIE51_RS08930at 1907.767 kb on - strand, within ABIE51_RS08930at 1907.826 kb on + strand, within ABIE51_RS08930at 1907.826 kb on + strand, within ABIE51_RS08930at 1907.827 kb on - strand, within ABIE51_RS08930at 1907.854 kb on + strand, within ABIE51_RS08930at 1908.033 kb on + strand, within ABIE51_RS08930at 1908.033 kb on + strand, within ABIE51_RS08930at 1908.033 kb on + strand, within ABIE51_RS08930at 1908.033 kb on + strand, within ABIE51_RS08930at 1908.034 kb on - strand, within ABIE51_RS08930at 1908.034 kb on - strand, within ABIE51_RS08930at 1908.034 kb on - strand, within ABIE51_RS08930at 1908.039 kb on + strand, within ABIE51_RS08930at 1908.280 kb on - strand, within ABIE51_RS08930at 1908.489 kb on + strand, within ABIE51_RS08930at 1908.490 kb on - strand, within ABIE51_RS08930at 1908.490 kb on - strand, within ABIE51_RS08930at 1908.540 kb on + strand, within ABIE51_RS08930at 1908.843 kb on + strand, within ABIE51_RS08930at 1908.844 kb on - strand, within ABIE51_RS08930at 1908.921 kb on + strand, within ABIE51_RS08930at 1908.922 kb on - strand, within ABIE51_RS08930at 1909.227 kb on + strand, within ABIE51_RS08930at 1909.227 kb on + strand, within ABIE51_RS08930at 1909.227 kb on + strand, within ABIE51_RS08930at 1909.228 kb on - strand, within ABIE51_RS08930at 1909.228 kb on - strand, within ABIE51_RS08930at 1909.237 kb on - strand, within ABIE51_RS08930at 1909.456 kb on - strand, within ABIE51_RS08930at 1909.456 kb on - strand, within ABIE51_RS08930at 1909.471 kb on - strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.692 kb on + strand, within ABIE51_RS08930at 1909.693 kb on - strand, within ABIE51_RS08930at 1909.744 kb on + strand, within ABIE51_RS08930at 1909.744 kb on + strand, within ABIE51_RS08930at 1909.745 kb on - strand, within ABIE51_RS08930at 1909.782 kb on + strand, within ABIE51_RS08930at 1909.782 kb on + strand, within ABIE51_RS08930at 1909.975 kb on - strand, within ABIE51_RS08930at 1909.981 kb on - strand, within ABIE51_RS08930at 1910.170 kb on - strand, within ABIE51_RS08930at 1910.170 kb on - strand, within ABIE51_RS08930at 1910.170 kb on - strand, within ABIE51_RS08930at 1910.194 kb on - strand, within ABIE51_RS08930at 1910.194 kb on - strand, within ABIE51_RS08930at 1910.272 kb on + strand, within ABIE51_RS08930at 1910.356 kb on - strand, within ABIE51_RS08930at 1910.356 kb on - strand, within ABIE51_RS08930at 1910.416 kb on - strand, within ABIE51_RS08930at 1910.556 kb on + strand, within ABIE51_RS08930at 1910.556 kb on + strand, within ABIE51_RS08930at 1910.569 kb on - strand, within ABIE51_RS08930at 1910.982 kb on + strandat 1910.982 kb on + strandat 1910.983 kb on - strandat 1910.983 kb on - strandat 1910.985 kb on + strandat 1910.985 kb on + strandat 1910.985 kb on + strandat 1910.986 kb on - strandat 1910.986 kb on - strandat 1910.986 kb on - strandat 1911.241 kb on - strandat 1911.259 kb on + strandat 1911.288 kb on + strandat 1911.288 kb on + strandat 1911.288 kb on + strandat 1911.318 kb on + strandat 1911.319 kb on - strandat 1911.319 kb on - strandat 1911.319 kb on - strandat 1911.319 kb on - strandat 1911.319 kb on - strandat 1911.319 kb on - strandat 1911.351 kb on + strandat 1911.351 kb on + strandat 1911.351 kb on + strandat 1911.351 kb on + strandat 1911.352 kb on - strandat 1911.352 kb on - strandat 1911.352 kb on - strandat 1911.534 kb on + strandat 1911.535 kb on - strandat 1911.587 kb on + strandat 1911.587 kb on + strandat 1911.587 kb on + strandat 1911.587 kb on + strandat 1911.587 kb on + strandat 1911.588 kb on - strandat 1911.625 kb on + strandat 1911.625 kb on + strandat 1911.626 kb on - strandat 1911.865 kb on + strandat 1911.866 kb on - strandat 1911.899 kb on - strandat 1911.899 kb on - strandat 1911.919 kb on + strandat 1912.172 kb on - strand, within ABIE51_RS08935at 1912.172 kb on - strand, within ABIE51_RS08935at 1912.231 kb on + strand, within ABIE51_RS08935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
1,905,746 + ABIE51_RS08925 0.43 +0.2
1,905,746 + ABIE51_RS08925 0.43 -0.0
1,905,747 - ABIE51_RS08925 0.43 +0.3
1,905,747 - ABIE51_RS08925 0.43 +0.9
1,905,747 - ABIE51_RS08925 0.43 -0.6
1,905,863 + ABIE51_RS08925 0.54 -0.3
1,905,863 + ABIE51_RS08925 0.54 -0.6
1,905,863 + ABIE51_RS08925 0.54 -0.1
1,905,864 - ABIE51_RS08925 0.54 -0.2
1,905,864 - ABIE51_RS08925 0.54 -0.2
1,905,864 - ABIE51_RS08925 0.54 -0.2
1,905,864 - ABIE51_RS08925 0.54 +0.1
1,905,944 + ABIE51_RS08925 0.62 -0.9
1,905,945 - ABIE51_RS08925 0.63 +1.9
1,905,977 + ABIE51_RS08925 0.66 -1.9
1,905,978 - ABIE51_RS08925 0.66 +0.9
1,905,978 - ABIE51_RS08925 0.66 +0.3
1,905,978 - ABIE51_RS08925 0.66 -0.4
1,905,978 - ABIE51_RS08925 0.66 -0.7
1,906,106 + ABIE51_RS08925 0.79 -0.4
1,906,303 + -1.5
1,906,303 + +0.2
1,906,304 - -0.2
1,906,304 - -0.4
1,906,435 + -0.8
1,906,436 - -1.2
1,906,437 + +0.1
1,906,437 + -1.1
1,906,663 - +0.4
1,906,851 + +1.5
1,906,851 + -0.3
1,906,851 + -0.0
1,906,851 + -0.1
1,906,852 - +1.6
1,906,926 + -0.3
1,906,926 + -0.1
1,906,927 - +0.6
1,907,064 + ABIE51_RS08930 0.12 -0.1
1,907,088 + ABIE51_RS08930 0.13 +1.1
1,907,088 + ABIE51_RS08930 0.13 +0.7
1,907,133 + ABIE51_RS08930 0.13 +0.1
1,907,175 + ABIE51_RS08930 0.14 -0.1
1,907,226 + ABIE51_RS08930 0.15 +0.3
1,907,226 + ABIE51_RS08930 0.15 -0.3
1,907,226 + ABIE51_RS08930 0.15 -0.4
1,907,226 + ABIE51_RS08930 0.15 +0.0
1,907,227 - ABIE51_RS08930 0.15 +0.4
1,907,271 + ABIE51_RS08930 0.16 +0.8
1,907,271 + ABIE51_RS08930 0.16 -1.9
1,907,272 - ABIE51_RS08930 0.16 +0.8
1,907,272 - ABIE51_RS08930 0.16 +0.6
1,907,313 + ABIE51_RS08930 0.17 +0.7
1,907,314 - ABIE51_RS08930 0.17 -1.7
1,907,356 + ABIE51_RS08930 0.18 +0.1
1,907,356 + ABIE51_RS08930 0.18 -0.4
1,907,357 - ABIE51_RS08930 0.18 -1.2
1,907,364 + ABIE51_RS08930 0.18 -0.3
1,907,387 + ABIE51_RS08930 0.19 -0.7
1,907,505 + ABIE51_RS08930 0.21 +0.5
1,907,505 + ABIE51_RS08930 0.21 -0.9
1,907,505 + ABIE51_RS08930 0.21 +0.3
1,907,506 - ABIE51_RS08930 0.21 -0.2
1,907,506 - ABIE51_RS08930 0.21 +0.3
1,907,506 - ABIE51_RS08930 0.21 -1.8
1,907,523 + ABIE51_RS08930 0.21 -0.1
1,907,523 + ABIE51_RS08930 0.21 -0.5
1,907,524 - ABIE51_RS08930 0.21 +0.9
1,907,524 - ABIE51_RS08930 0.21 +0.2
1,907,524 - ABIE51_RS08930 0.21 +0.1
1,907,524 - ABIE51_RS08930 0.21 +0.8
1,907,524 - ABIE51_RS08930 0.21 +0.3
1,907,662 - ABIE51_RS08930 0.24 -0.1
1,907,766 + ABIE51_RS08930 0.26 +1.3
1,907,766 + ABIE51_RS08930 0.26 +0.2
1,907,766 + ABIE51_RS08930 0.26 +1.3
1,907,766 + ABIE51_RS08930 0.26 -0.6
1,907,767 - ABIE51_RS08930 0.26 -0.5
1,907,767 - ABIE51_RS08930 0.26 -0.7
1,907,767 - ABIE51_RS08930 0.26 -0.7
1,907,826 + ABIE51_RS08930 0.27 +0.1
1,907,826 + ABIE51_RS08930 0.27 +0.2
1,907,827 - ABIE51_RS08930 0.27 -0.2
1,907,854 + ABIE51_RS08930 0.28 +0.1
1,908,033 + ABIE51_RS08930 0.32 +0.1
1,908,033 + ABIE51_RS08930 0.32 -0.1
1,908,033 + ABIE51_RS08930 0.32 +0.9
1,908,033 + ABIE51_RS08930 0.32 -0.5
1,908,034 - ABIE51_RS08930 0.32 -1.4
1,908,034 - ABIE51_RS08930 0.32 +0.7
1,908,034 - ABIE51_RS08930 0.32 +0.3
1,908,039 + ABIE51_RS08930 0.32 -0.6
1,908,280 - ABIE51_RS08930 0.37 -0.5
1,908,489 + ABIE51_RS08930 0.41 +0.1
1,908,490 - ABIE51_RS08930 0.41 -0.5
1,908,490 - ABIE51_RS08930 0.41 -0.2
1,908,540 + ABIE51_RS08930 0.42 -0.4
1,908,843 + ABIE51_RS08930 0.48 -0.5
1,908,844 - ABIE51_RS08930 0.48 -0.1
1,908,921 + ABIE51_RS08930 0.50 -1.0
1,908,922 - ABIE51_RS08930 0.50 -0.8
1,909,227 + ABIE51_RS08930 0.56 +0.8
1,909,227 + ABIE51_RS08930 0.56 +0.3
1,909,227 + ABIE51_RS08930 0.56 -0.3
1,909,228 - ABIE51_RS08930 0.56 -1.9
1,909,228 - ABIE51_RS08930 0.56 -0.9
1,909,237 - ABIE51_RS08930 0.56 -0.7
1,909,456 - ABIE51_RS08930 0.60 -0.5
1,909,456 - ABIE51_RS08930 0.60 -0.1
1,909,471 - ABIE51_RS08930 0.61 +0.0
1,909,692 + ABIE51_RS08930 0.65 +0.1
1,909,692 + ABIE51_RS08930 0.65 +2.9
1,909,692 + ABIE51_RS08930 0.65 +1.0
1,909,692 + ABIE51_RS08930 0.65 +0.3
1,909,692 + ABIE51_RS08930 0.65 -0.4
1,909,692 + ABIE51_RS08930 0.65 -0.7
1,909,692 + ABIE51_RS08930 0.65 -0.1
1,909,692 + ABIE51_RS08930 0.65 +0.7
1,909,692 + ABIE51_RS08930 0.65 +0.3
1,909,693 - ABIE51_RS08930 0.65 -0.9
1,909,744 + ABIE51_RS08930 0.66 -0.4
1,909,744 + ABIE51_RS08930 0.66 +0.7
1,909,745 - ABIE51_RS08930 0.66 -0.1
1,909,782 + ABIE51_RS08930 0.67 -0.2
1,909,782 + ABIE51_RS08930 0.67 +0.3
1,909,975 - ABIE51_RS08930 0.71 +0.2
1,909,981 - ABIE51_RS08930 0.71 +0.7
1,910,170 - ABIE51_RS08930 0.75 -0.4
1,910,170 - ABIE51_RS08930 0.75 -0.9
1,910,170 - ABIE51_RS08930 0.75 +0.8
1,910,194 - ABIE51_RS08930 0.75 -0.0
1,910,194 - ABIE51_RS08930 0.75 -0.6
1,910,272 + ABIE51_RS08930 0.77 -0.3
1,910,356 - ABIE51_RS08930 0.78 +0.5
1,910,356 - ABIE51_RS08930 0.78 +0.3
1,910,416 - ABIE51_RS08930 0.80 +1.8
1,910,556 + ABIE51_RS08930 0.82 -0.4
1,910,556 + ABIE51_RS08930 0.82 +0.2
1,910,569 - ABIE51_RS08930 0.83 -0.3
1,910,982 + +0.3
1,910,982 + -2.5
1,910,983 - -0.1
1,910,983 - +0.3
1,910,985 + +0.0
1,910,985 + -0.3
1,910,985 + +0.6
1,910,986 - -0.5
1,910,986 - +0.3
1,910,986 - -0.6
1,911,241 - +0.0
1,911,259 + +0.2
1,911,288 + +1.4
1,911,288 + +0.7
1,911,288 + -1.2
1,911,318 + -0.7
1,911,319 - +0.0
1,911,319 - -0.4
1,911,319 - +0.1
1,911,319 - +0.6
1,911,319 - -3.0
1,911,319 - +1.1
1,911,351 + +0.4
1,911,351 + -0.4
1,911,351 + +1.1
1,911,351 + +0.8
1,911,352 - -0.5
1,911,352 - -0.7
1,911,352 - -0.6
1,911,534 + -1.0
1,911,535 - +1.2
1,911,587 + -0.7
1,911,587 + -1.1
1,911,587 + -1.5
1,911,587 + -0.2
1,911,587 + +0.5
1,911,588 - +0.4
1,911,625 + -0.6
1,911,625 + +0.7
1,911,626 - +0.1
1,911,865 + -0.1
1,911,866 - -0.1
1,911,899 - -0.2
1,911,899 - -1.7
1,911,919 + +0.0
1,912,172 - ABIE51_RS08935 0.20 -2.1
1,912,172 - ABIE51_RS08935 0.20 +1.5
1,912,231 + ABIE51_RS08935 0.22 -0.0

Or see this region's nucleotide sequence