Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02874 and SMc02875 are separated by 199 nucleotides SMc02875 and SMc02876 overlap by 4 nucleotides SMc02876 and SMc02877 are separated by 93 nucleotides
SMc02874: SMc02874 - N-acetylmuramic acid 6-phosphate etherase, at 230,235 to 231,131
SMc02874
SMc02875: SMc02875 - N-acetylglucosamine kinase (EC 2.7.1.59) <small>(from data)</small>, at 231,331 to 232,215
SMc02875
SMc02876: SMc02876 - transcriptional regulator, at 232,212 to 232,976
SMc02876
SMc02877: SMc02877 - hypothetical protein, at 233,070 to 234,092
SMc02877
Position (kb) 231
232
233 Strain fitness (log2 ratio) -1
0
1 at 230.403 kb on + strand, within SMc02874 at 230.404 kb on - strand, within SMc02874 at 230.702 kb on - strand, within SMc02874 at 230.800 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.868 kb on + strand, within SMc02874 at 230.869 kb on - strand, within SMc02874 at 230.869 kb on - strand, within SMc02874 at 230.875 kb on + strand, within SMc02874 at 231.250 kb on + strand at 231.386 kb on + strand at 231.438 kb on + strand, within SMc02875 at 231.445 kb on - strand, within SMc02875 at 231.473 kb on + strand, within SMc02875 at 231.586 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.706 kb on + strand, within SMc02875 at 231.707 kb on - strand, within SMc02875 at 231.707 kb on - strand, within SMc02875 at 231.736 kb on + strand, within SMc02875 at 231.737 kb on - strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.833 kb on + strand, within SMc02875 at 231.834 kb on - strand, within SMc02875 at 232.938 kb on + strand at 233.020 kb on + strand at 233.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 230,403 + SMc02874 0.19 +0.5 230,404 - SMc02874 0.19 -0.8 230,702 - SMc02874 0.52 +0.5 230,800 + SMc02874 0.63 -0.6 230,868 + SMc02874 0.71 -0.2 230,868 + SMc02874 0.71 -0.2 230,868 + SMc02874 0.71 +1.1 230,869 - SMc02874 0.71 +1.1 230,869 - SMc02874 0.71 -0.1 230,875 + SMc02874 0.71 +0.1 231,250 + -1.2 231,386 + +1.0 231,438 + SMc02875 0.12 -0.7 231,445 - SMc02875 0.13 -1.4 231,473 + SMc02875 0.16 -0.5 231,586 + SMc02875 0.29 +0.1 231,706 + SMc02875 0.42 -0.3 231,706 + SMc02875 0.42 +0.1 231,706 + SMc02875 0.42 -1.4 231,707 - SMc02875 0.42 -1.7 231,707 - SMc02875 0.42 -1.3 231,736 + SMc02875 0.46 +0.3 231,737 - SMc02875 0.46 +1.1 231,833 + SMc02875 0.57 -0.4 231,833 + SMc02875 0.57 -0.4 231,833 + SMc02875 0.57 -0.0 231,833 + SMc02875 0.57 +0.1 231,833 + SMc02875 0.57 -0.2 231,834 - SMc02875 0.57 -0.8 232,938 + -0.3 233,020 + +0.7 233,048 + -0.8
Or see this region's nucleotide sequence