Strain Fitness in Sinorhizobium meliloti 1021 around SMc00538

Experiment: D-Raffinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00488 and SMc00487 are separated by 125 nucleotidesSMc00487 and SMc00538 are separated by 414 nucleotidesSMc00538 and SMc00537 are separated by 350 nucleotides SMc00488: SMc00488 - phosphoribosylformylglycinamidine synthase II, at 1,921,045 to 1,923,276 SMc00488 SMc00487: SMc00487 - hypothetical protein, at 1,923,402 to 1,923,635 SMc00487 SMc00538: SMc00538 - hypothetical protein, at 1,924,050 to 1,924,385 SMc00538 SMc00537: SMc00537 - transporter, at 1,924,736 to 1,925,974 SMc00537 Position (kb) 1924 1925Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1923.070 kb on + strandat 1923.070 kb on + strandat 1923.071 kb on - strandat 1923.071 kb on - strandat 1923.244 kb on + strandat 1923.244 kb on + strandat 1923.245 kb on - strandat 1923.347 kb on - strandat 1923.347 kb on - strandat 1923.499 kb on - strand, within SMc00487at 1923.564 kb on + strand, within SMc00487at 1923.564 kb on + strand, within SMc00487at 1923.564 kb on + strand, within SMc00487at 1923.565 kb on - strand, within SMc00487at 1923.565 kb on - strand, within SMc00487at 1923.565 kb on - strand, within SMc00487at 1923.595 kb on + strand, within SMc00487at 1923.596 kb on - strand, within SMc00487at 1923.779 kb on + strandat 1923.779 kb on + strandat 1923.811 kb on - strandat 1923.884 kb on - strandat 1923.884 kb on - strandat 1923.897 kb on + strandat 1923.897 kb on + strandat 1923.898 kb on - strandat 1923.994 kb on + strandat 1923.994 kb on + strandat 1923.998 kb on + strandat 1924.362 kb on - strandat 1924.362 kb on - strandat 1924.454 kb on + strandat 1924.477 kb on + strandat 1924.597 kb on + strandat 1924.597 kb on + strandat 1924.598 kb on - strandat 1924.638 kb on + strandat 1924.710 kb on + strandat 1924.711 kb on - strandat 1924.731 kb on - strandat 1924.731 kb on - strandat 1924.731 kb on - strandat 1924.749 kb on + strandat 1924.750 kb on - strandat 1924.907 kb on + strand, within SMc00537at 1924.908 kb on - strand, within SMc00537at 1924.915 kb on - strand, within SMc00537at 1924.922 kb on + strand, within SMc00537at 1924.922 kb on + strand, within SMc00537at 1925.047 kb on - strand, within SMc00537at 1925.092 kb on - strand, within SMc00537at 1925.142 kb on - strand, within SMc00537at 1925.292 kb on + strand, within SMc00537at 1925.293 kb on - strand, within SMc00537at 1925.367 kb on + strand, within SMc00537at 1925.368 kb on - strand, within SMc00537at 1925.368 kb on - strand, within SMc00537at 1925.368 kb on - strand, within SMc00537

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Raffinose (C)
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1,923,070 + -1.9
1,923,070 + -7.0
1,923,071 - -4.3
1,923,071 - -3.0
1,923,244 + -3.6
1,923,244 + -1.7
1,923,245 - -4.6
1,923,347 - -1.0
1,923,347 - +0.2
1,923,499 - SMc00487 0.41 +0.2
1,923,564 + SMc00487 0.69 +0.1
1,923,564 + SMc00487 0.69 +0.2
1,923,564 + SMc00487 0.69 +0.3
1,923,565 - SMc00487 0.70 +1.6
1,923,565 - SMc00487 0.70 -0.7
1,923,565 - SMc00487 0.70 -1.5
1,923,595 + SMc00487 0.82 -0.7
1,923,596 - SMc00487 0.83 -0.5
1,923,779 + -0.6
1,923,779 + +1.4
1,923,811 - -0.3
1,923,884 - +0.1
1,923,884 - +0.2
1,923,897 + -0.8
1,923,897 + -0.7
1,923,898 - -0.3
1,923,994 + +0.9
1,923,994 + -0.6
1,923,998 + -0.3
1,924,362 - +0.6
1,924,362 - +0.4
1,924,454 + +0.2
1,924,477 + +0.1
1,924,597 + +0.0
1,924,597 + -0.6
1,924,598 - +0.6
1,924,638 + +0.1
1,924,710 + +0.7
1,924,711 - -0.3
1,924,731 - +0.1
1,924,731 - +0.1
1,924,731 - -0.2
1,924,749 + -0.1
1,924,750 - -0.4
1,924,907 + SMc00537 0.14 -0.2
1,924,908 - SMc00537 0.14 +0.3
1,924,915 - SMc00537 0.14 -0.1
1,924,922 + SMc00537 0.15 -0.1
1,924,922 + SMc00537 0.15 +1.0
1,925,047 - SMc00537 0.25 -0.5
1,925,092 - SMc00537 0.29 -0.2
1,925,142 - SMc00537 0.33 +0.3
1,925,292 + SMc00537 0.45 +0.4
1,925,293 - SMc00537 0.45 +0.4
1,925,367 + SMc00537 0.51 +0.4
1,925,368 - SMc00537 0.51 -0.2
1,925,368 - SMc00537 0.51 +0.4
1,925,368 - SMc00537 0.51 +0.1

Or see this region's nucleotide sequence