Experiment: D-Raffinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0005 and SMa0007 overlap by 23 nucleotides SMa0007 and SMa0009 are separated by 38 nucleotides SMa0009 and SMa0011 are separated by 4 nucleotides
SMa0005: SMa0005 - formate dehydrogenase susbunit beta, at 4,454 to 5,446
SMa0005
SMa0007: SMa0007 - formate dehydrogenase subunit gamma, at 5,424 to 6,110
SMa0007
SMa0009: SMa0009 - formate dehydrogenase subunit epsilon, at 6,149 to 7,069
SMa0009
SMa0011: SMa0011 - selenocysteine synthase, at 7,074 to 8,474
SMa0011
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.180 kb on + strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.181 kb on - strand, within SMa0005 at 5.213 kb on + strand, within SMa0005 at 5.213 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.279 kb on + strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.280 kb on - strand, within SMa0005 at 5.790 kb on + strand, within SMa0007 at 5.790 kb on + strand, within SMa0007 at 5.790 kb on + strand, within SMa0007 at 5.791 kb on - strand, within SMa0007 at 5.791 kb on - strand, within SMa0007 at 5.877 kb on + strand, within SMa0007 at 5.883 kb on + strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.884 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.890 kb on - strand, within SMa0007 at 5.891 kb on + strand, within SMa0007 at 5.891 kb on + strand at 5.891 kb on + strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.892 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 5.977 kb on - strand, within SMa0007 at 6.166 kb on - strand at 6.296 kb on + strand, within SMa0009 at 6.297 kb on - strand, within SMa0009 at 6.620 kb on + strand, within SMa0009 at 6.620 kb on + strand, within SMa0009 at 6.620 kb on + strand, within SMa0009 at 6.620 kb on + strand, within SMa0009 at 6.621 kb on - strand, within SMa0009 at 6.621 kb on - strand, within SMa0009 at 6.621 kb on - strand, within SMa0009 at 6.861 kb on - strand, within SMa0009 at 6.944 kb on + strand, within SMa0009 at 7.028 kb on + strand at 7.028 kb on + strand at 7.196 kb on - strand at 7.340 kb on + strand, within SMa0011 at 7.341 kb on - strand, within SMa0011 at 7.695 kb on + strand, within SMa0011 at 7.696 kb on - strand, within SMa0011 at 7.696 kb on - strand, within SMa0011 at 7.742 kb on + strand, within SMa0011 at 7.743 kb on - strand, within SMa0011 at 7.752 kb on + strand, within SMa0011 at 7.872 kb on + strand, within SMa0011 at 7.873 kb on - strand, within SMa0011
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose (C) remove 5,180 + SMa0005 0.73 +0.0 5,180 + SMa0005 0.73 -0.5 5,180 + SMa0005 0.73 +0.6 5,180 + SMa0005 0.73 -0.4 5,180 + SMa0005 0.73 -0.2 5,180 + SMa0005 0.73 +0.5 5,180 + SMa0005 0.73 -1.4 5,180 + SMa0005 0.73 -0.1 5,180 + SMa0005 0.73 +0.4 5,181 - SMa0005 0.73 -0.4 5,181 - SMa0005 0.73 +0.6 5,181 - SMa0005 0.73 -0.8 5,181 - SMa0005 0.73 +0.0 5,181 - SMa0005 0.73 +0.2 5,181 - SMa0005 0.73 -0.5 5,181 - SMa0005 0.73 +1.4 5,213 + SMa0005 0.76 -1.7 5,213 + SMa0005 0.76 -1.6 5,279 + SMa0005 0.83 -0.2 5,279 + SMa0005 0.83 +0.3 5,279 + SMa0005 0.83 +0.0 5,280 - SMa0005 0.83 +0.1 5,280 - SMa0005 0.83 -0.2 5,280 - SMa0005 0.83 +0.1 5,790 + SMa0007 0.53 +0.2 5,790 + SMa0007 0.53 -0.7 5,790 + SMa0007 0.53 -0.7 5,791 - SMa0007 0.53 -1.0 5,791 - SMa0007 0.53 +1.1 5,877 + SMa0007 0.66 +0.4 5,883 + SMa0007 0.67 -0.3 5,884 - SMa0007 0.67 -0.6 5,884 - SMa0007 0.67 -0.9 5,884 - SMa0007 0.67 -1.9 5,884 - SMa0007 0.67 +0.2 5,890 - SMa0007 0.68 +1.3 5,890 - SMa0007 0.68 +0.1 5,890 - SMa0007 0.68 -0.1 5,890 - SMa0007 0.68 +0.1 5,891 + SMa0007 0.68 +0.1 5,891 + +2.1 5,891 + SMa0007 0.68 +0.4 5,892 - SMa0007 0.68 -1.4 5,892 - SMa0007 0.68 -0.2 5,892 - SMa0007 0.68 -0.8 5,892 - SMa0007 0.68 +0.3 5,892 - SMa0007 0.68 +0.4 5,892 - SMa0007 0.68 -0.5 5,977 - SMa0007 0.80 -1.8 5,977 - SMa0007 0.80 +0.7 5,977 - SMa0007 0.80 -0.2 6,166 - -0.5 6,296 + SMa0009 0.16 -0.4 6,297 - SMa0009 0.16 -0.9 6,620 + SMa0009 0.51 -0.8 6,620 + SMa0009 0.51 -2.2 6,620 + SMa0009 0.51 -0.3 6,620 + SMa0009 0.51 +0.1 6,621 - SMa0009 0.51 +0.4 6,621 - SMa0009 0.51 +0.4 6,621 - SMa0009 0.51 -0.0 6,861 - SMa0009 0.77 -0.4 6,944 + SMa0009 0.86 -0.3 7,028 + -0.2 7,028 + +1.1 7,196 - -0.4 7,340 + SMa0011 0.19 +0.3 7,341 - SMa0011 0.19 -0.5 7,695 + SMa0011 0.44 +0.0 7,696 - SMa0011 0.44 -0.2 7,696 - SMa0011 0.44 +0.5 7,742 + SMa0011 0.48 -0.6 7,743 - SMa0011 0.48 -1.1 7,752 + SMa0011 0.48 +0.1 7,872 + SMa0011 0.57 -0.0 7,873 - SMa0011 0.57 +0.3
Or see this region's nucleotide sequence